Import Geant4 10.0.0 source tree

examples/.doxygen/.README.novice

@@ -0,0 +1,26 @@
+// $Id: .README 66536 2012-12-19 14:32:36Z ihrivnac $
+
+///\file ".README.novice"
+///\brief Geant4 Old Novice Examples README page
+
+/*! \page README_novice Old Novice Examples
+
+The old "novice" set of examples is now replaced with a new "basic" set, 
+covering the most typical use-cases of a Geant4 application with keeping 
+simplicity and ease of use.
+
+The source code of the last version of the novice examples set 
+(in 9.6.p02 release) can be viewed in
+<a href="http://www-geant4.kek.jp/lxr/source/examples/novice/?v=9.6.p2">
+the Geant4 LXR code browser </a>
+
+The new location of each example in 10.0 release:
+- N01 - removed
+- N02 - \link ExampleB2 basic/B2 \endlink
+- N03 - \link ExampleB4 basic/B4 \endlink
+- N04 - \link ExampleRE05 extended/runAndEvent/RE05 \endlink
+- N05 - \link ExamplePar01 extended/parameterisations/Par01 \endlink
+- N06 - \link ExampleOpNovice extended/optical/OpNovice \endlink
+- N07 - \link ExampleRE06 extended/runAndEvent/RE06 \endlink
+
+*/

examples/.doxygen/.svn/dir-prop-base

@@ -0,0 +1,6 @@
+K 13
+svn:mergeinfo
+V 170
+/branches/geant4/_symbols/09-06-refmt-01_branch/examples/.doxygen:66825-66880,66925-66956
+/tags/geant4/_symbols/geant4-09-06-refmt-01-step6a/examples/.doxygen:66881-66882
+END

examples/.doxygen/.svn/text-base/.README.novice.svn-base

@@ -0,0 +1,26 @@
+// $Id: .README 66536 2012-12-19 14:32:36Z ihrivnac $
+
+///\file ".README.novice"
+///\brief Geant4 Old Novice Examples README page
+
+/*! \page README_novice Old Novice Examples
+
+The old "novice" set of examples is now replaced with a new "basic" set, 
+covering the most typical use-cases of a Geant4 application with keeping 
+simplicity and ease of use.
+
+The source code of the last version of the novice examples set 
+(in 9.6.p02 release) can be viewed in
+<a href="http://www-geant4.kek.jp/lxr/source/examples/novice/?v=9.6.p2">
+the Geant4 LXR code browser </a>
+
+The new location of each example in 10.0 release:
+- N01 - removed
+- N02 - \link ExampleB2 basic/B2 \endlink
+- N03 - \link ExampleB4 basic/B4 \endlink
+- N04 - \link ExampleRE05 extended/runAndEvent/RE05 \endlink
+- N05 - \link ExamplePar01 extended/parameterisations/Par01 \endlink
+- N06 - \link ExampleOpNovice extended/optical/OpNovice \endlink
+- N07 - \link ExampleRE06 extended/runAndEvent/RE06 \endlink
+
+*/

examples/.doxygen/.svn/text-base/Doxymain.h.svn-base

@@ -10,25 +10,24 @@ the user how to make correct use of the GEANT4 toolkit by implementing
 in a correct way those user-classes which the user is supposed to
 customize in order to define his/her own simulation setup.
 
-The <b>"novice"</b> set of examples is oriented to novice users and covering all
-possible general use-cases typical of an "application"-oriented kind of
-development. As several examples in this "novice" set became too complicated, 
-a new <b>"basic"</b> set, covering the most typical use-cases of a Geant4 application
-with keeping simplicity and ease of use, is provided and is going to replace
-the "novice" set in future.
+The <b>"basic"</b> set of examples is oriented to novice users and covering 
+the most typical use-cases of a Geant4 application with keeping simplicity 
+and ease of use.
 
-An <b>"extended"</b> set of examples require some additional
-libraries besides of Geant4. This set covers some specific use cases
-for actual detector simulation. An <b>"advanced"</b> set of examples covers
-the use-cases typical of a "toolkit"-oriented kind of development,
-where real complete applications for different simulation studies are
-provided; may require additional third party products to be built.
+An <b>"extended"</b> set of examples may require some additional libraries besides 
+of Geant4. This set covers many specific use cases for actual detector 
+simulation. 
+
+An <b>"advanced"</b> set of examples covers the use-cases typical of a 
+"toolkit"-oriented kind of development, where real complete applications 
+for different simulation studies are provided; may require additional third 
+party products to be built.
 
 Most of the examples can be run both in interactive and batch mode, and 
 input macro files (*.in) and reference output files (*.out) are provided.
-Basic, novice and most of the extended examples are considered part of the
+Basic and most of the extended examples are considered part of the
 system testing suite for validation of the official releases of the
-GEANT4 toolkit. Basic, novice and some of the extended and advanced
+GEANT4 toolkit. Basic and some of the extended and advanced
 examples are also used as "acceptance"-tests for the release process.
 
 See more on each examples category pages:
@@ -37,8 +36,14 @@ See more on each examples category pages:
 - <a href="http://geant4advancedexampleswg.wikispaces.com/ExamplesDocumentation">
   Advanced Examples </a>
 
+The previous set of examples oriented to novice users, <b>"novice"</b>,
+has been refactored in "basic" and "extended" examples sets in Geant4 10.0.
+The information about the original set of these examples can be found at
+\link README_novice this page \endlink.
+
 And more on what is common for all examples:
 - \ref README_HowToRun 
+- \ref README_HowToRunMT 
 - \ref README_HowToNavigate
 
 

examples/.doxygen/.svn/text-base/Doxymodules_analysis.h.svn-base

@@ -79,12 +79,21 @@
 
 /** @} */
 
-/** @defgroup extended_analysis_N03Con N03Con
- *  Analysis AnaEx03 example has its 
- *  <a href="../html_N03Con/html/index.html">standalone documentation </a>
+/** @defgroup extended_analysis_B1Con B1Con
+ *  Analysis example B1Con 
  *  @ingroup extended_analysis
  *  @{
  */
+
+  class B1ConActionInitialization{};
+  class B1ConRunAction{};
+  class B1ConRun{};
+  class B1DetectorConstruction{};
+  class B1EventAction{};
+  class B1PrimaryGeneratorAction{};
+  class B1Run{};
+  class B1SteppingAction{};
+
 /** @} */
 
 

examples/.doxygen/.svn/text-base/Doxymodules_basic.h.svn-base

@@ -17,9 +17,11 @@
  *  @{
  */
 
+  class B1ActionInitialization{};
   class B1DetectorConstruction{};
   class B1EventAction{};
   class B1PrimaryGeneratorAction{};
+  class B1Run{};
   class B1RunAction{};
   class B1SteppingAction{};
 
@@ -37,10 +39,10 @@
  *  @{
  */
 
+  class B2ActionInitialization{};
   class B2aDetectorConstruction{};
   class B2aDetectorMessenger{};
   class B2EventAction{};
-  class B2MagneticField{};
   class B2PrimaryGeneratorAction{};
   class B2RunAction{};
   class B2TrackerHit{};
@@ -54,11 +56,11 @@
  *  @{
  */
 
+  class B2ActionInitialization{};
   class B2bChamberParameterisation{};
   class B2bDetectorConstruction{};
   class B2bDetectorMessenger{};
   class B2EventAction{};
-  class B2MagneticField{};
   class B2PrimaryGeneratorAction{};
   class B2RunAction{};
   class B2TrackerHit{};
@@ -74,12 +76,13 @@
  *  @{
  */
 
+  class B3ActionInitialization{};
   class B3DetectorConstruction{};
-  class B3EventAction{};
   class B3PhysicsList{};
   class B3PrimaryGeneratorAction{};
-  class B3StackingAction{};
+  class B3Run{};
   class B3RunAction{};
+  class B3StackingAction{};
 
 /** @} */
 
@@ -96,6 +99,7 @@
  *  @{
  */
 
+  class B4aActionInitialization{};
   class B4aEventAction{};
   class B4aSteppingAction{};
   class B4DetectorConstruction{};
@@ -111,12 +115,13 @@
  *  @{
  */
 
+  class B4bActionInitialization{};
   class B4bEventAction{};
+  class B4bRunAction{};
   class B4bRunData{};
   class B4bSteppingAction{};
   class B4DetectorConstruction{};
   class B4PrimaryGeneratorAction{};
-  class B4RunAction{};
 
 /** @} */
 
@@ -126,9 +131,10 @@
  *  @{
  */
 
-  class B4cDetectorConstruction{};
+  class B4cActionInitialization{};
   class B4cCalorHit{};
   class B4cCalorimeterSD{};
+  class B4cDetectorConstruction{};
   class B4cEventAction{};
   class B4PrimaryGeneratorAction{};
   class B4RunAction{};
@@ -142,6 +148,7 @@
  *  @{
  */
 
+  class B4dActionInitialization{};
   class B4dDetectorConstruction{};
   class B4dEventAction{};
   class B4PrimaryGeneratorAction{};
@@ -150,3 +157,29 @@
 /** @} */
 
 /** @} */
+
+/** @defgroup B5 B5
+ *  Example B5 
+ *  @ingroup basic
+ *  @{
+ */
+
+  class B5ActionInitialization{};
+  class B5CellParameterisation{};
+  class B5DetectorConstruction{};
+  class B5DriftChamberHit{};
+  class B5DriftChamberSD{};
+  class B5EmCalorimeterHit{};
+  class B5EmCalorimeterSD{};
+  class B5EventAction{};
+  class B5HadCalorimeterHit{};
+  class B5HadCalorimeterSD{};
+  class B5HodoscopeHit{};
+  class B5HodoscopeSD{};
+  class B5MagneticField{};
+  class B5PrimaryGeneratorAction{};
+  class B5RunAction{};
+
+/** @} */
+
+/** @} */

examples/.doxygen/.svn/text-base/Doxymodules_biasing.h.svn-base

@@ -47,6 +47,33 @@
 
 /** @} */
 
+/** @defgroup extended_biasing_GB01 GB01
+ *  Biasing example GB01
+ *  @ingroup extended_biasing
+ *  @{
+ */
+
+  class GB01ActionInitialization {};
+  class GB01BOptrChangeCrossSection {};
+  class GB01BOptrMultiParticleChangeCrossSection {};
+  class GB01DetectorConstruction {};
+  class GB01PrimaryGeneratorAction {};
+
+/** @} */
+
+/** @defgroup extended_biasing_GB02 GB02
+ *  Biasing example GB02
+ *  @ingroup extended_biasing
+ *  @{
+ */
+
+  class GB02ActionInitialization {};
+  class GB02BOptrMultiParticleForceCollision {};
+  class GB02DetectorConstruction {};
+  class GB02PrimaryGeneratorAction {};
+
+/** @} */
+
 /** @defgroup extended_biasing_ReverseMC01 ReverseMC01
  *  Biasing example ReverseMC01
  *  @ingroup extended_biasing

examples/.doxygen/.svn/text-base/Doxymodules_field.h.svn-base

@@ -30,6 +30,7 @@
  *  @{
  */
 
+  class F01ActionInitialization {};
   class F01CalorHit {};
   class F01CalorimeterSD {};
   class F01DetectorConstruction {};
@@ -45,8 +46,6 @@
   class F01RunAction {};
   class F01RunMessenger {};
   class F01StepCut {};
-  class F01SteppingAction {};
-  class F01SteppingMessenger {};
   class F01SteppingVerbose {};
 
 /** @} */
@@ -56,6 +55,7 @@
  *  @{
  */
 
+  class F02ActionInitialization {};
   class F02CalorHit {};
   class F02CalorimeterSD {};
   class F02DetectorConstruction {};
@@ -71,8 +71,6 @@
   class F02RunAction {};
   class F02RunMessenger {};
   class F02StepCut {};
-  class F02SteppingAction {};
-  class F02SteppingMessenger {};
   class F02SteppingVerbose {};
 
 /** @} */
@@ -97,8 +95,6 @@
   class F03RunAction {};
   class F03RunMessenger {};
   class F03StepCut {};
-  class F03SteppingAction {};
-  class F03SteppingMessenger {};
   class F03SteppingVerbose {};
 
 /** @} */
@@ -143,12 +139,14 @@
  *  @{
  */
 
+  class F05ActionInitialization {};
   class F05DetectorConstruction {};
   class F05ExtraPhysics {};
   class F05Field {};
   class F05PhysicsList {};
   class F05PrimaryGeneratorAction {};
   class F05SteppingAction {};
+  class F05SteppingVerbose {};
 
 /** @} */
 
@@ -157,11 +155,9 @@
  *  @{
  */
 
+  class F06ActionInitialization {};
   class F06DetectorConstruction {};
-  class F06EventAction {};
-  class F06EventActionMessenger {};
   class F06ExtraPhysics {};
-  class F06Field {};
   class F06PhysicsList {};
   class F06PrimaryGeneratorAction {};
 

examples/.doxygen/.svn/text-base/Doxymodules_g3tog4.h.svn-base

@@ -15,6 +15,7 @@
  *  @{
  */
 
+  class G3toG4ActionInitialization {};
   class G3toG4DetectorConstruction {};
 
 /** @} */

examples/.doxygen/.svn/text-base/Doxymodules_geometry.h.svn-base

@@ -10,28 +10,6 @@
  *  @{
  */
 
-/** @defgroup extended_geometry_olap olap
- *  Geometry example olap
- *  @{
- */
-
-  class G4GeoNav {};
-  class OlapDetConstr {};
-  class OlapEventAction {};
-  class OlapGenerator {};
-  class OlapLogManager {};
-  class OlapManager {};
-  class OlapManagerMessenger {};
-  class OlapNotify {};
-  class OlapPhysicsList {};
-  class OlapRunAction {};
-  class OlapSteppingAction {};
-  class RandomDetector {};
-  class SolidAnalyser {};
-  class tree {};
-
-/** @} */
-
 /** @defgroup extended_geometry_transforms transforms
  *  Geometry example transforms has its
  *  <a href="../html_transforms/html/index.html">standalone documentation </a>

examples/.doxygen/.svn/text-base/Doxymodules_hadronic.h.svn-base

@@ -46,4 +46,21 @@
 
 /** @} */
 
+/** @defgroup extended_hadronic_Hadr04 Hadr04
+ *  The shared hadronic classes have their
+ *  <a href="../html_Hadr04/html/index.html">standalone documentation </a>
+ *  @ingroup extended_hadronic
+ *  @{
+ */
+
+/** @} */
+
+/** @defgroup extended_hadronic_Hadr05 Hadr05
+ *  The shared hadronic classes have their
+ *  <a href="../html_Hadr05/html/index.html">standalone documentation </a>
+ *  @ingroup extended_hadronic
+ *  @{
+ */
+
+/** @} */
 /** @} */

examples/.doxygen/.svn/text-base/Doxymodules_medical.h.svn-base

@@ -16,6 +16,7 @@
  *  @{
  */
 
+  class DicomActionInitialization {};
   class DicomDetectorConstruction {};
   class DicomEventAction {};
   class DicomHandler {};
@@ -25,13 +26,12 @@
   class DicomPartialDetectorConstruction {};
   class DicomPhantomParameterisationColour {};
   class DicomPhantomZSliceHeader {};
+  class DicomPhantomZSliceMerged {};
   class DicomPhysicsList {};
   class DicomPrimaryGeneratorAction {};
   class DicomRegularDetectorConstruction {};
   class DicomRunAction {};
   class DicomRun {};
-  class NestedParamDicomDetectorConstruction {};
-  class RegularDicomDetectorConstruction {};
 
 /** @} */
 

examples/.doxygen/.svn/text-base/Doxymodules_optical.h.svn-base

@@ -10,6 +10,25 @@
  *  @{
  */
 
+/** @defgroup extended_optical_OpNovice OpNovice
+ *  Optical example OpNovice
+ *  @ingroup extended_optical
+ *  @{
+ */
+ 
+  class OpNoviceActionInitialization {};
+  class OpNoviceDetectorConstruction {};
+  class OpNovicePhysicsList {};
+  class OpNovicePhysicsListMessenger {};
+  class OpNovicePrimaryGeneratorAction {};
+  class OpNovicePrimaryGeneratorMessenger {};
+  class OpNoviceRunAction {};
+  class OpNoviceStackingAction {};
+  class OpNoviceSteppingVerbose {}; 
+
+/** @} */
+
+
 /** @defgroup extended_optical_LXe LXe
  *  Optical example LXe 
  *  @ingroup extended_optical
@@ -51,6 +70,7 @@
  *  @{
  */
 
+  class WLSActionInitialization {};
   class WLSDetectorConstruction {};
   class WLSDetectorMessenger {};
   class WLSEventAction {};

examples/.doxygen/.svn/text-base/Doxymodules_parallel.h.svn-base

@@ -37,10 +37,45 @@
 
 /** @} */
 
+/** @defgroup extended_parallel_TBB TBB
+ *  Extended examples parallel TBB classes
+ *  @{
+ */
+
+/** @defgroup extended_parallel_TBB_B2b TBB B2b
+ *  Example TBB B2b 
+ *  @ingroup extended_parallel_TBB
+ *  @{
+ */
+
+  class B2ActionInitialization {};
+  class B2bChamberParameterisation {};
+  class B2bDetectorConstruction {};
+  class B2bDetectorMessenger {};
+  class B2EventAction {};
+  class B2PrimaryGeneratorAction {};
+  class B2RunAction {};
+  class B2TrackerHit {};
+  class B2TrackerSD {};
+  class tbbMasterRunManager {};
+  class tbbTask {};
+  class tbbUserWorkerInitialization {};
+  class tbbWorkerRunManager {};
+
+/** @} */
+
+/** @} */
+
+/** @defgroup extended_parallel_TopC TopC
+ *  Extended examples parallel TopC classes
+ *  @{
+ */
+
+
 /** @defgroup extended_parallel_ParN02 ParN02
  *  Parallel ParN02 example has its 
  *  <a href="../html_ParN02/html/index.html">standalone documentation </a>
- *  @ingroup extended_parallel
+ *  @ingroup extended_parallel_TopC
  *  @{
  */
 
@@ -49,10 +84,12 @@
 /** @defgroup extended_parallel_ParN04 ParN04
  *  Parallel ParN04 example has its 
  *  <a href="../html_ParN04/html/index.html">standalone documentation </a>
- *  @ingroup extended_parallel
+ *  @ingroup extended_parallel_TopC
  *  @{
  */
 
 /** @} */
 
 /** @} */
+
+/** @} */

examples/.doxygen/.svn/text-base/Doxymodules_parameterisations.h.svn-base

@@ -10,16 +10,36 @@
  *  @{
  */
 
+/** @defgroup extended_parameterisations_Par01 Par01
+ *  parameterisations example Par01
+ *  @{
+ */
+
+class Par01ActionInitialization {};
+class Par01CalorimeterHit {};
+class Par01CalorimeterSD {};
+class Par01DetectorConstruction {};
+class Par01EMShowerModel {};
+class Par01EnergySpot {};
+class Par01ParallelWorldForPion {};
+class Par01PhysicsList {};
+class Par01PiModel {};
+class Par01PionShowerModel {};
+class Par01PrimaryGeneratorAction {};
+
+
+/** @} */
+
 /** @defgroup extended_parameterisations_gflash gflash
  *  parameterisations example gflash
  *  @{
  */
 
+  class ExGflashActionInitialization {};
   class ExGflashDetectorConstruction {};
   class ExGflashEventAction {};
   class ExGflashHit {};
   class ExGflashHitsCollection {};
-  class ExGflashMaterialManager {};
   class ExGflashPhysicsList {};
   class ExGflashPrimaryGeneratorAction {};
   class ExGflashRunAction {};

examples/.doxygen/.svn/text-base/Doxymodules_persistency.h.svn-base

@@ -116,6 +116,7 @@
  *  @{
  */
 
+  class ExTGActionInitialization {};
   class ExTGDetectorConstruction {};
   class ExTGDetectorConstructionWithCpp {};
   class ExTGDetectorConstructionWithCuts {};

examples/.doxygen/.svn/text-base/Doxymodules_runAndEvent.h.svn-base

@@ -16,20 +16,15 @@
  *  @{
  */
 
-  class RE01BosonPhysics {};
+  class RE01ActionInitialization {};
   class RE01CalorimeterHit {};
   class RE01CalorimeterParametrisation {};
   class RE01CalorimeterROGeometry {};
   class RE01CalorimeterSD {};
-  class RE01DecayPhysics {};
   class RE01DetectorConstruction {};
   class RE01DetectorParameterDef {};
-  class RE01DummySD {};
   class RE01EventAction {};
   class RE01Field {};
-  class RE01HadronPhysics {};
-  class RE01IonPhysics {};
-  class RE01LeptonPhysics {};
   class RE01PhysicsList {};
   class RE01PrimaryGeneratorAction {};
   class RE01PrimaryGeneratorMessenger {};
@@ -43,6 +38,7 @@
   class RE01TrackInformation {};
   class RE01TrackingAction {};
   class RE01Trajectory {};
+  class RE01UnknownDecayPhysics {};
 
 /** @} */
 
@@ -52,15 +48,10 @@
  *  @{
  */
 
+  class RE02ActionInitialization {};
   class RE02DetectorConstruction {};
-  class RE02EMPhysics {};
   class RE02EventAction {};
-  class RE02GeneralPhysics {};
-  class RE02HadronPhysics {};
-  class RE02IonPhysics {};
-  class RE02MuonPhysics {};
   class RE02NestedPhantomParameterisation {};
-  class RE02PhysicsList {};
   class RE02PrimaryGeneratorAction {};
   class RE02PSCellFlux {};
   class RE02PSEnergyDeposit {};
@@ -79,8 +70,8 @@
  *  @{
  */
 
+  class RE03ActionInitialization {};
   class RE03DetectorConstruction {};
-  class RE03PhysicsList {};
   class RE03PrimaryGeneratorAction {};
   class RE03UserScoreWriter {};
 
@@ -92,6 +83,7 @@
  *  @{
  */
 
+  class RE04ActionInitialization {};
   class RE04DetectorConstruction {};
   class RE04EventAction {};
   class RE04ParallelWorldConstruction {};
@@ -105,5 +97,56 @@
 
 /** @} */
 
+/** @defgroup extended_runAndEvent_RE05 RE05
+ *  RunAndEvent example RE05
+ *  @ingroup extended_runAndEvent
+ *  @{
+ */
+
+  class RE05ActionInitialization {};
+  class RE05CalorimeterHit {};
+  class RE05CalorimeterParametrisation {};
+  class RE05CalorimeterROGeometry {};
+  class RE05CalorimeterSD {};
+  class RE05DetectorConstruction {};
+  class RE05DetectorParameterDef {};
+  class RE05DummySD {};
+  class RE05EventAction {};
+  class RE05Field {};
+  class RE05MuonHit {};
+  class RE05MuonSD {};
+  class RE05PrimaryGeneratorAction {};
+  class RE05PrimaryGeneratorMessenger {};
+  class RE05RunAction {};
+  class RE05StackingAction {};
+  class RE05StackingActionMessenger {};
+  class RE05SteppingAction {};
+  class RE05SteppingVerbose {};
+  class RE05TrackerHit {};
+  class RE05TrackerParametrisation {};
+  class RE05TrackerSD {};
+  class RE05TrackingAction {};
+  class RE05WorkerInitialization {};
+
+/** @} */
+
+/** @defgroup extended_runAndEvent_RE06 RE06
+ *  RunAndEvent example RE06
+ *  @ingroup extended_runAndEvent
+ *  @{
+ */
+
+  class RE06ActionInitialization {};
+  class RE06DetectorConstruction {};
+  class RE06DetectorMessenger {};
+  class RE06ParallelWorld {};
+  class RE06PhysicsList {};
+  class RE06PrimaryGeneratorAction {};
+  class RE06RunAction {};
+  class RE06Run {};
+  class RE06SteppingVerbose {};
+  class RE06WorkerInitialization {};
+
+/** @} */
 
 /** @} */

examples/.doxygen/.svn/text-base/History.svn-base

@@ -18,6 +18,12 @@ track of all tags.
      * Reverse chronological order (last date on top), please *
      ----------------------------------------------------------
 
+29/11/12 I.Hrivnacova (doxygen-V09-06-01)
+- Updated configuration files for 10.0 release
+
+17/11/12 I.Hrivnacova (doxygen-V09-06-00)
+- Updated configuration files for 10.0 release
+
 26/11/12 I.Hrivnacova (doxygen-V09-05-02)
 - Updated Doxyfile for removing .README.HowToRunTestEm1
 

examples/.doxygen/.svn/text-base/extra_stylesheet.css.svn-base

@@ -0,0 +1,41 @@
+/* The standard CSS for doxygen 1.8.5 */
+/* Extension for Geant4 example documentation */
+
+/* header style */			
+#g4header {
+  color: black;
+  background-color: #CCCC99;
+  border: 1px solid #999966;
+/*  border: 10px solid white; */
+  padding-top: .5em;
+  padding-right: 1em;
+  width: 100%;
+  margin-bottom: .5em;
+  -moz-border-radius: 15px;
+}
+
+#g4header img {
+  padding-left: 1em;	
+  background: #cccc99;
+}
+
+#breadcrumb { 
+  color: #003366; 
+  background-color: #9999FF;
+  border: 0;
+  border-right: 1em solid white;
+  font-weight: bold;
+  text-align: left;
+  font-size: 90%;
+}
+
+/* overwrite default size of \section and \subsection titles: 150% */
+h1 {
+  font-size: 130%;
+}
+h2 {
+  font-size: 120%;
+}
+h3 {
+  font-size: 110%;
+}

examples/.doxygen/.svn/text-base/footer.html.svn-base

@@ -0,0 +1,39 @@
+<!-- HTML footer for doxygen 1.8.5-->
+<!-- Updated for Geant4 examples documentation-->
+<!-- start footer part -->
+<!--BEGIN GENERATE_TREEVIEW-->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    $navpath
+    <li class="footer">$generatedby
+    <a href="http://www.doxygen.org/index.html">
+    <img class="footer" src="$relpath^doxygen.png" alt="doxygen"/></a> $doxygenversion </li>
+  </ul>
+</div>
+<!--END GENERATE_TREEVIEW-->
+<!--BEGIN !GENERATE_TREEVIEW-->
+<hr class="footer"/><address class="footer"><small>
+$generatedby &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="$relpath^doxygen.png" alt="doxygen"/>
+</a> $doxygenversion
+</small></address>
+<!--END !GENERATE_TREEVIEW-->
+<hr>
+<a href="http://cern.ch/geant4/applications/index.shtml">Applications</a> | 
+<a href="http://cern.ch/geant4/support/index.shtml">User Support</a> |
+<a href="http://cern.ch/geant4/results/index.shtml">Results &amp; Publications</a> |
+<a href="http://cern.ch/geant4/collaboration/index.shtml">Collaboration</a> | 
+<a href="http://cern.ch/geant4/sitemap.shtml">Site Map</a><br />
+<p></p>
+<script type="text/javascript">
+<!--//
+var zap_domain = "cern.ch"
+var zap_user = "Gunter.Folger"
+var zap_recipient = zap_user + "@" + zap_domain
+var zap_url = "mailto:" + zap_recipient +"?subject=Feedback&body=My feedback concerns the page at: " + " " + escape(top.parent.location.href)
+document.write('<a href="' + zap_url + '" target=>Contact Webmaster</a>')
+//-->
+</script>
+<br/><br/>
+</body>
+</html>

examples/.doxygen/.svn/text-base/generate_standalone.sh.svn-base

@@ -6,6 +6,7 @@
 CURDIR=`pwd`
 
 BACK_PATH2="../../../.doxygen/doc"
+BACK_PATH3="../../../../.doxygen/doc"
 BACK_PATH4="../../../../../.doxygen/doc"
 
 # generate documentation 
@@ -44,10 +45,15 @@ generate() {
 }
 
 # process examples in second level directory in extended
-for DIR in analysis/shared analysis/AnaEx01 analysis/AnaEx02 analysis/AnaEx03 electromagnetic/TestEm0 electromagnetic/TestEm1 electromagnetic/TestEm2 electromagnetic/TestEm3 electromagnetic/TestEm4 electromagnetic/TestEm5 electromagnetic/TestEm6 electromagnetic/TestEm7 electromagnetic/TestEm8 electromagnetic/TestEm9 electromagnetic/TestEm10 electromagnetic/TestEm11 electromagnetic/TestEm12 electromagnetic/TestEm13 electromagnetic/TestEm14 electromagnetic/TestEm15 electromagnetic/TestEm16 electromagnetic/TestEm17 electromagnetic/TestEm18 eventgenerator/particleGun exoticphysics/monopole geometry/transforms hadronic/Hadr00 hadronic/Hadr01 hadronic/Hadr02 hadronic/Hadr03 medical/electronScattering medical/electronScattering2 medical/fanoCavity medical/fanoCavity2 medical/GammaTherapy parallel/ParN02 parallel/ParN04 polarisation/Pol01 radioactivedecay/rdecay01 radioactivedecay/rdecay02; do
+for DIR in analysis/shared analysis/AnaEx01 analysis/AnaEx02 analysis/AnaEx03 electromagnetic/TestEm0 electromagnetic/TestEm1 electromagnetic/TestEm2 electromagnetic/TestEm3 electromagnetic/TestEm4 electromagnetic/TestEm5 electromagnetic/TestEm6 electromagnetic/TestEm7 electromagnetic/TestEm8 electromagnetic/TestEm9 electromagnetic/TestEm10 electromagnetic/TestEm11 electromagnetic/TestEm12 electromagnetic/TestEm13 electromagnetic/TestEm14 electromagnetic/TestEm15 electromagnetic/TestEm16 electromagnetic/TestEm17 electromagnetic/TestEm18 eventgenerator/particleGun exoticphysics/monopole geometry/transforms hadronic/Hadr00 hadronic/Hadr01 hadronic/Hadr02 hadronic/Hadr03 hadronic/Hadr04 hadronic/Hadr05 medical/electronScattering medical/electronScattering2 medical/fanoCavity medical/fanoCavity2 medical/GammaTherapy polarisation/Pol01 radioactivedecay/rdecay01 radioactivedecay/rdecay02; do
   generate ${DIR} ${BACK_PATH2}
 done  
 
+# process examples in third level directory in extended
+for DIR in parallel/TopC/ParN02  parallel/TopC/ParN04; do
+  generate ${DIR} ${BACK_PATH3}
+done  
+
 # process examples in fourth level directory in extended
 for DIR in  parallel/MPI/examples/exMPI01 parallel/MPI/examples/exMPI02; do
   generate ${DIR} ${BACK_PATH4}

examples/.doxygen/.svn/text-base/header.html.svn-base

@@ -0,0 +1,67 @@
+<!-- HTML header for doxygen 1.8.5-->
+<!-- Updated for Geant4 examples documentation-->
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=9"/>
+<meta name="generator" content="Doxygen $doxygenversion"/>
+<!--BEGIN PROJECT_NAME--><title>$projectname: $title</title><!--END PROJECT_NAME-->
+<!--BEGIN !PROJECT_NAME--><title>$title</title><!--END !PROJECT_NAME-->
+<link href="$relpath^tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="$relpath^jquery.js"></script>
+<script type="text/javascript" src="$relpath^dynsections.js"></script>
+$treeview
+$search
+$mathjax
+<link href="$relpath^$stylesheet" rel="stylesheet" type="text/css" />
+$extrastylesheet
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+
+<!--BEGIN TITLEAREA-->
+<div id="titlearea">
+<div id="g4header">
+<table cellpadding="0" cellspacing="0" width="98%">
+  <tr>
+    <td><a href="index.shtml">
+    <img alt="Geant4 Home" src="geanttiny.gif" width="164" height="40" /></a>
+    </td>
+    <td align="right" class="doNotPrint">
+    <a href="http://cern.ch/geant4/support/download.shtml">Download</a> 
+    | <a href="http://hypernews.slac.stanford.edu/HyperNews/geant4/cindex">User 
+    Forum</a> | <a href="http://cern.ch/geant4/gallery/index.html">
+    Gallery</a><br />
+    <a href="http://cern.ch/geant4/collaboration/contacts.shtml">
+    Contact Us</a><br />
+      <form method="get" action="http://www.cern.ch/cgi-bin/directory-search.pl">
+      <input type="hidden" value="No" name="SubSearch" />
+      <input type="hidden" value="url:wwwinfo.cern.ch/asd/geant4/G4UsersDocuments/
+url:geant4.web.cern.ch/geant4/G4UsersDocuments/" name="AdditionalQuery" />
+      <input type="hidden" value="searchbrowse.html" name="TemplateFile" />
+      <input type="hidden" value="http://wwwinfo.cern.ch/asd/" name="Referer" />
+      <input type="hidden" value="cern" name="qc" />
+      <input type="hidden" value="cern" name="col" />
+      <input size="35" name="qt" />
+      <input type="submit" value="Search Geant4" />
+    </form>
+    </td>
+  </tr>
+</table>
+</div>
+</div>
+<table cellspacing="6" cellpadding="0" width="100%">
+  <tr>
+    <td id="breadcrumb" colspan="4">
+    <!-- start bread crumb -->
+       <a href="http://geant4.web.cern.ch/geant4/index.shtml">Home</a> &gt;
+       <a href="http://geant4.web.cern.ch/geant4/UserDocumentation/Doxygen/examples_doc/html/index.html">Examples</a>
+    <!-- end bread crumb-->
+    </td>
+  </tr>
+</table>  
+<!--END TITLEAREA-->
+<!-- end header part -->
+
+

examples/.doxygen/Doxymain.h

@@ -1,4 +1,4 @@
-// $Id: Doxymain.h 65679 2012-11-26 13:41:53Z gcosmo $
+// $Id: Doxymain.h 78005 2013-12-02 08:29:57Z gcosmo $
 
 /// \file Doxymain.h
 /// \brief The main page for Geant4 Examples code documenation
@@ -10,25 +10,24 @@ the user how to make correct use of the GEANT4 toolkit by implementing
 in a correct way those user-classes which the user is supposed to
 customize in order to define his/her own simulation setup.
 
-The <b>"novice"</b> set of examples is oriented to novice users and covering all
-possible general use-cases typical of an "application"-oriented kind of
-development. As several examples in this "novice" set became too complicated, 
-a new <b>"basic"</b> set, covering the most typical use-cases of a Geant4 application
-with keeping simplicity and ease of use, is provided and is going to replace
-the "novice" set in future.
+The <b>"basic"</b> set of examples is oriented to novice users and covering 
+the most typical use-cases of a Geant4 application with keeping simplicity 
+and ease of use.
 
-An <b>"extended"</b> set of examples require some additional
-libraries besides of Geant4. This set covers some specific use cases
-for actual detector simulation. An <b>"advanced"</b> set of examples covers
-the use-cases typical of a "toolkit"-oriented kind of development,
-where real complete applications for different simulation studies are
-provided; may require additional third party products to be built.
+An <b>"extended"</b> set of examples may require some additional libraries besides 
+of Geant4. This set covers many specific use cases for actual detector 
+simulation. 
+
+An <b>"advanced"</b> set of examples covers the use-cases typical of a 
+"toolkit"-oriented kind of development, where real complete applications 
+for different simulation studies are provided; may require additional third 
+party products to be built.
 
 Most of the examples can be run both in interactive and batch mode, and 
 input macro files (*.in) and reference output files (*.out) are provided.
-Basic, novice and most of the extended examples are considered part of the
+Basic and most of the extended examples are considered part of the
 system testing suite for validation of the official releases of the
-GEANT4 toolkit. Basic, novice and some of the extended and advanced
+GEANT4 toolkit. Basic and some of the extended and advanced
 examples are also used as "acceptance"-tests for the release process.
 
 See more on each examples category pages:
@@ -37,8 +36,14 @@ See more on each examples category pages:
 - <a href="http://geant4advancedexampleswg.wikispaces.com/ExamplesDocumentation">
   Advanced Examples </a>
 
+The previous set of examples oriented to novice users, <b>"novice"</b>,
+has been refactored in "basic" and "extended" examples sets in Geant4 10.0.
+The information about the original set of these examples can be found at
+\link README_novice this page \endlink.
+
 And more on what is common for all examples:
 - \ref README_HowToRun 
+- \ref README_HowToRunMT 
 - \ref README_HowToNavigate
 
 

examples/.doxygen/Doxymodules_analysis.h

@@ -1,4 +1,4 @@
-// $Id: Doxymodules_analysis.h 60059 2012-06-27 13:00:49Z gcosmo $
+// $Id: Doxymodules_analysis.h 78005 2013-12-02 08:29:57Z gcosmo $
 // The example class categories definitions for Doxygen
 
 /// \file Doxymodules_analysis.h
@@ -79,12 +79,21 @@
 
 /** @} */
 
-/** @defgroup extended_analysis_N03Con N03Con
- *  Analysis AnaEx03 example has its 
- *  <a href="../html_N03Con/html/index.html">standalone documentation </a>
+/** @defgroup extended_analysis_B1Con B1Con
+ *  Analysis example B1Con 
  *  @ingroup extended_analysis
  *  @{
  */
+
+  class B1ConActionInitialization{};
+  class B1ConRunAction{};
+  class B1ConRun{};
+  class B1DetectorConstruction{};
+  class B1EventAction{};
+  class B1PrimaryGeneratorAction{};
+  class B1Run{};
+  class B1SteppingAction{};
+
 /** @} */
 
 

examples/.doxygen/Doxymodules_basic.h

@@ -1,4 +1,4 @@
-// $Id: Doxymodules_basic.h 65679 2012-11-26 13:41:53Z gcosmo $
+// $Id: Doxymodules_basic.h 76473 2013-11-11 10:35:14Z gcosmo $
 // The example class categories definitions for Doxygen
 
 /// \file Doxymodules_basic.h
@@ -17,9 +17,11 @@
  *  @{
  */
 
+  class B1ActionInitialization{};
   class B1DetectorConstruction{};
   class B1EventAction{};
   class B1PrimaryGeneratorAction{};
+  class B1Run{};
   class B1RunAction{};
   class B1SteppingAction{};
 
@@ -37,10 +39,10 @@
  *  @{
  */
 
+  class B2ActionInitialization{};
   class B2aDetectorConstruction{};
   class B2aDetectorMessenger{};
   class B2EventAction{};
-  class B2MagneticField{};
   class B2PrimaryGeneratorAction{};
   class B2RunAction{};
   class B2TrackerHit{};
@@ -54,11 +56,11 @@
  *  @{
  */
 
+  class B2ActionInitialization{};
   class B2bChamberParameterisation{};
   class B2bDetectorConstruction{};
   class B2bDetectorMessenger{};
   class B2EventAction{};
-  class B2MagneticField{};
   class B2PrimaryGeneratorAction{};
   class B2RunAction{};
   class B2TrackerHit{};
@@ -74,12 +76,13 @@
  *  @{
  */
 
+  class B3ActionInitialization{};
   class B3DetectorConstruction{};
-  class B3EventAction{};
   class B3PhysicsList{};
   class B3PrimaryGeneratorAction{};
-  class B3StackingAction{};
+  class B3Run{};
   class B3RunAction{};
+  class B3StackingAction{};
 
 /** @} */
 
@@ -96,6 +99,7 @@
  *  @{
  */
 
+  class B4aActionInitialization{};
   class B4aEventAction{};
   class B4aSteppingAction{};
   class B4DetectorConstruction{};
@@ -111,12 +115,13 @@
  *  @{
  */
 
+  class B4bActionInitialization{};
   class B4bEventAction{};
+  class B4bRunAction{};
   class B4bRunData{};
   class B4bSteppingAction{};
   class B4DetectorConstruction{};
   class B4PrimaryGeneratorAction{};
-  class B4RunAction{};
 
 /** @} */
 
@@ -126,9 +131,10 @@
  *  @{
  */
 
-  class B4cDetectorConstruction{};
+  class B4cActionInitialization{};
   class B4cCalorHit{};
   class B4cCalorimeterSD{};
+  class B4cDetectorConstruction{};
   class B4cEventAction{};
   class B4PrimaryGeneratorAction{};
   class B4RunAction{};
@@ -142,6 +148,7 @@
  *  @{
  */
 
+  class B4dActionInitialization{};
   class B4dDetectorConstruction{};
   class B4dEventAction{};
   class B4PrimaryGeneratorAction{};
@@ -150,3 +157,29 @@
 /** @} */
 
 /** @} */
+
+/** @defgroup B5 B5
+ *  Example B5 
+ *  @ingroup basic
+ *  @{
+ */
+
+  class B5ActionInitialization{};
+  class B5CellParameterisation{};
+  class B5DetectorConstruction{};
+  class B5DriftChamberHit{};
+  class B5DriftChamberSD{};
+  class B5EmCalorimeterHit{};
+  class B5EmCalorimeterSD{};
+  class B5EventAction{};
+  class B5HadCalorimeterHit{};
+  class B5HadCalorimeterSD{};
+  class B5HodoscopeHit{};
+  class B5HodoscopeSD{};
+  class B5MagneticField{};
+  class B5PrimaryGeneratorAction{};
+  class B5RunAction{};
+
+/** @} */
+
+/** @} */

examples/.doxygen/Doxymodules_biasing.h

@@ -1,4 +1,4 @@
-// $Id: Doxymodules_biasing.h 60059 2012-06-27 13:00:49Z gcosmo $
+// $Id: Doxymodules_biasing.h 76473 2013-11-11 10:35:14Z gcosmo $
 // The example class categories definitions for Doxygen
 
 /// \file Doxymodules_biasing.h
@@ -47,6 +47,33 @@
 
 /** @} */
 
+/** @defgroup extended_biasing_GB01 GB01
+ *  Biasing example GB01
+ *  @ingroup extended_biasing
+ *  @{
+ */
+
+  class GB01ActionInitialization {};
+  class GB01BOptrChangeCrossSection {};
+  class GB01BOptrMultiParticleChangeCrossSection {};
+  class GB01DetectorConstruction {};
+  class GB01PrimaryGeneratorAction {};
+
+/** @} */
+
+/** @defgroup extended_biasing_GB02 GB02
+ *  Biasing example GB02
+ *  @ingroup extended_biasing
+ *  @{
+ */
+
+  class GB02ActionInitialization {};
+  class GB02BOptrMultiParticleForceCollision {};
+  class GB02DetectorConstruction {};
+  class GB02PrimaryGeneratorAction {};
+
+/** @} */
+
 /** @defgroup extended_biasing_ReverseMC01 ReverseMC01
  *  Biasing example ReverseMC01
  *  @ingroup extended_biasing

examples/.doxygen/Doxymodules_field.h

@@ -1,4 +1,4 @@
-// $Id: Doxymodules_field.h 60059 2012-06-27 13:00:49Z gcosmo $
+// $Id: Doxymodules_field.h 76473 2013-11-11 10:35:14Z gcosmo $
 // The example class categories definitions for Doxygen
 
 /// \file Doxymodules_field.h
@@ -30,6 +30,7 @@
  *  @{
  */
 
+  class F01ActionInitialization {};
   class F01CalorHit {};
   class F01CalorimeterSD {};
   class F01DetectorConstruction {};
@@ -45,8 +46,6 @@
   class F01RunAction {};
   class F01RunMessenger {};
   class F01StepCut {};
-  class F01SteppingAction {};
-  class F01SteppingMessenger {};
   class F01SteppingVerbose {};
 
 /** @} */
@@ -56,6 +55,7 @@
  *  @{
  */
 
+  class F02ActionInitialization {};
   class F02CalorHit {};
   class F02CalorimeterSD {};
   class F02DetectorConstruction {};
@@ -71,8 +71,6 @@
   class F02RunAction {};
   class F02RunMessenger {};
   class F02StepCut {};
-  class F02SteppingAction {};
-  class F02SteppingMessenger {};
   class F02SteppingVerbose {};
 
 /** @} */
@@ -97,8 +95,6 @@
   class F03RunAction {};
   class F03RunMessenger {};
   class F03StepCut {};
-  class F03SteppingAction {};
-  class F03SteppingMessenger {};
   class F03SteppingVerbose {};
 
 /** @} */
@@ -143,12 +139,14 @@
  *  @{
  */
 
+  class F05ActionInitialization {};
   class F05DetectorConstruction {};
   class F05ExtraPhysics {};
   class F05Field {};
   class F05PhysicsList {};
   class F05PrimaryGeneratorAction {};
   class F05SteppingAction {};
+  class F05SteppingVerbose {};
 
 /** @} */
 
@@ -157,11 +155,9 @@
  *  @{
  */
 
+  class F06ActionInitialization {};
   class F06DetectorConstruction {};
-  class F06EventAction {};
-  class F06EventActionMessenger {};
   class F06ExtraPhysics {};
-  class F06Field {};
   class F06PhysicsList {};
   class F06PrimaryGeneratorAction {};
 

examples/.doxygen/Doxymodules_g3tog4.h

@@ -1,4 +1,4 @@
-// $Id: Doxymodules_g3tog4.h 60059 2012-06-27 13:00:49Z gcosmo $
+// $Id: Doxymodules_g3tog4.h 76473 2013-11-11 10:35:14Z gcosmo $
 // The example class categories definitions for Doxygen
 
 /// \file Doxymodules_g3tog4.h
@@ -15,6 +15,7 @@
  *  @{
  */
 
+  class G3toG4ActionInitialization {};
   class G3toG4DetectorConstruction {};
 
 /** @} */

examples/.doxygen/Doxymodules_geometry.h

@@ -1,4 +1,4 @@
-// $Id: Doxymodules_geometry.h 60059 2012-06-27 13:00:49Z gcosmo $
+// $Id: Doxymodules_geometry.h 76473 2013-11-11 10:35:14Z gcosmo $
 // The example class categories definitions for Doxygen
 
 /// \file Doxymodules_geometry.h
@@ -10,28 +10,6 @@
  *  @{
  */
 
-/** @defgroup extended_geometry_olap olap
- *  Geometry example olap
- *  @{
- */
-
-  class G4GeoNav {};
-  class OlapDetConstr {};
-  class OlapEventAction {};
-  class OlapGenerator {};
-  class OlapLogManager {};
-  class OlapManager {};
-  class OlapManagerMessenger {};
-  class OlapNotify {};
-  class OlapPhysicsList {};
-  class OlapRunAction {};
-  class OlapSteppingAction {};
-  class RandomDetector {};
-  class SolidAnalyser {};
-  class tree {};
-
-/** @} */
-
 /** @defgroup extended_geometry_transforms transforms
  *  Geometry example transforms has its
  *  <a href="../html_transforms/html/index.html">standalone documentation </a>

examples/.doxygen/Doxymodules_hadronic.h

@@ -1,4 +1,4 @@
-// $Id: Doxymodules_hadronic.h 65679 2012-11-26 13:41:53Z gcosmo $
+// $Id: Doxymodules_hadronic.h 78005 2013-12-02 08:29:57Z gcosmo $
 // The example class categories definitions for Doxygen
 
 /// \file Doxymodules_hadronic.h
@@ -46,4 +46,21 @@
 
 /** @} */
 
+/** @defgroup extended_hadronic_Hadr04 Hadr04
+ *  The shared hadronic classes have their
+ *  <a href="../html_Hadr04/html/index.html">standalone documentation </a>
+ *  @ingroup extended_hadronic
+ *  @{
+ */
+
+/** @} */
+
+/** @defgroup extended_hadronic_Hadr05 Hadr05
+ *  The shared hadronic classes have their
+ *  <a href="../html_Hadr05/html/index.html">standalone documentation </a>
+ *  @ingroup extended_hadronic
+ *  @{
+ */
+
+/** @} */
 /** @} */

examples/.doxygen/Doxymodules_medical.h

@@ -1,4 +1,4 @@
-// $Id: Doxymodules_medical.h 65679 2012-11-26 13:41:53Z gcosmo $
+// $Id: Doxymodules_medical.h 76473 2013-11-11 10:35:14Z gcosmo $
 // The example class categories definitions for Doxygen
 
 /// \file Doxymodules_medical.h
@@ -16,6 +16,7 @@
  *  @{
  */
 
+  class DicomActionInitialization {};
   class DicomDetectorConstruction {};
   class DicomEventAction {};
   class DicomHandler {};
@@ -25,13 +26,12 @@
   class DicomPartialDetectorConstruction {};
   class DicomPhantomParameterisationColour {};
   class DicomPhantomZSliceHeader {};
+  class DicomPhantomZSliceMerged {};
   class DicomPhysicsList {};
   class DicomPrimaryGeneratorAction {};
   class DicomRegularDetectorConstruction {};
   class DicomRunAction {};
   class DicomRun {};
-  class NestedParamDicomDetectorConstruction {};
-  class RegularDicomDetectorConstruction {};
 
 /** @} */
 

examples/.doxygen/Doxymodules_optical.h

@@ -1,4 +1,4 @@
-// $Id: Doxymodules_optical.h 60059 2012-06-27 13:00:49Z gcosmo $
+// $Id: Doxymodules_optical.h 76473 2013-11-11 10:35:14Z gcosmo $
 // The example class categories definitions for Doxygen
 
 /// \file Doxymodules_optical.h
@@ -10,6 +10,25 @@
  *  @{
  */
 
+/** @defgroup extended_optical_OpNovice OpNovice
+ *  Optical example OpNovice
+ *  @ingroup extended_optical
+ *  @{
+ */
+ 
+  class OpNoviceActionInitialization {};
+  class OpNoviceDetectorConstruction {};
+  class OpNovicePhysicsList {};
+  class OpNovicePhysicsListMessenger {};
+  class OpNovicePrimaryGeneratorAction {};
+  class OpNovicePrimaryGeneratorMessenger {};
+  class OpNoviceRunAction {};
+  class OpNoviceStackingAction {};
+  class OpNoviceSteppingVerbose {}; 
+
+/** @} */
+
+
 /** @defgroup extended_optical_LXe LXe
  *  Optical example LXe 
  *  @ingroup extended_optical
@@ -51,6 +70,7 @@
  *  @{
  */
 
+  class WLSActionInitialization {};
   class WLSDetectorConstruction {};
   class WLSDetectorMessenger {};
   class WLSEventAction {};

examples/.doxygen/Doxymodules_parallel.h

@@ -1,4 +1,4 @@
-// $Id: Doxymodules_parallel.h 60059 2012-06-27 13:00:49Z gcosmo $
+// $Id: Doxymodules_parallel.h 78005 2013-12-02 08:29:57Z gcosmo $
 // The example class categories definitions for Doxygen
 
 /// \file Doxymodules_parallel.h
@@ -37,10 +37,45 @@
 
 /** @} */
 
+/** @defgroup extended_parallel_TBB TBB
+ *  Extended examples parallel TBB classes
+ *  @{
+ */
+
+/** @defgroup extended_parallel_TBB_B2b TBB B2b
+ *  Example TBB B2b 
+ *  @ingroup extended_parallel_TBB
+ *  @{
+ */
+
+  class B2ActionInitialization {};
+  class B2bChamberParameterisation {};
+  class B2bDetectorConstruction {};
+  class B2bDetectorMessenger {};
+  class B2EventAction {};
+  class B2PrimaryGeneratorAction {};
+  class B2RunAction {};
+  class B2TrackerHit {};
+  class B2TrackerSD {};
+  class tbbMasterRunManager {};
+  class tbbTask {};
+  class tbbUserWorkerInitialization {};
+  class tbbWorkerRunManager {};
+
+/** @} */
+
+/** @} */
+
+/** @defgroup extended_parallel_TopC TopC
+ *  Extended examples parallel TopC classes
+ *  @{
+ */
+
+
 /** @defgroup extended_parallel_ParN02 ParN02
  *  Parallel ParN02 example has its 
  *  <a href="../html_ParN02/html/index.html">standalone documentation </a>
- *  @ingroup extended_parallel
+ *  @ingroup extended_parallel_TopC
  *  @{
  */
 
@@ -49,10 +84,12 @@
 /** @defgroup extended_parallel_ParN04 ParN04
  *  Parallel ParN04 example has its 
  *  <a href="../html_ParN04/html/index.html">standalone documentation </a>
- *  @ingroup extended_parallel
+ *  @ingroup extended_parallel_TopC
  *  @{
  */
 
 /** @} */
 
 /** @} */
+
+/** @} */

examples/.doxygen/Doxymodules_parameterisations.h

@@ -1,4 +1,4 @@
-// $Id: Doxymodules_parameterisations.h 60059 2012-06-27 13:00:49Z gcosmo $
+// $Id: Doxymodules_parameterisations.h 78005 2013-12-02 08:29:57Z gcosmo $
 // The example class categories definitions for Doxygen
 
 /// \file Doxymodules_parameterisations.h
@@ -10,16 +10,36 @@
  *  @{
  */
 
+/** @defgroup extended_parameterisations_Par01 Par01
+ *  parameterisations example Par01
+ *  @{
+ */
+
+class Par01ActionInitialization {};
+class Par01CalorimeterHit {};
+class Par01CalorimeterSD {};
+class Par01DetectorConstruction {};
+class Par01EMShowerModel {};
+class Par01EnergySpot {};
+class Par01ParallelWorldForPion {};
+class Par01PhysicsList {};
+class Par01PiModel {};
+class Par01PionShowerModel {};
+class Par01PrimaryGeneratorAction {};
+
+
+/** @} */
+
 /** @defgroup extended_parameterisations_gflash gflash
  *  parameterisations example gflash
  *  @{
  */
 
+  class ExGflashActionInitialization {};
   class ExGflashDetectorConstruction {};
   class ExGflashEventAction {};
   class ExGflashHit {};
   class ExGflashHitsCollection {};
-  class ExGflashMaterialManager {};
   class ExGflashPhysicsList {};
   class ExGflashPrimaryGeneratorAction {};
   class ExGflashRunAction {};

examples/.doxygen/Doxymodules_persistency.h

@@ -1,4 +1,4 @@
-// $Id: Doxymodules_persistency.h 65679 2012-11-26 13:41:53Z gcosmo $
+// $Id: Doxymodules_persistency.h 76473 2013-11-11 10:35:14Z gcosmo $
 // The example class categories definitions for Doxygen
 
 /// \file Doxymodules_persistency.h
@@ -116,6 +116,7 @@
  *  @{
  */
 
+  class ExTGActionInitialization {};
   class ExTGDetectorConstruction {};
   class ExTGDetectorConstructionWithCpp {};
   class ExTGDetectorConstructionWithCuts {};

examples/.doxygen/Doxymodules_runAndEvent.h

@@ -1,4 +1,4 @@
-// $Id: Doxymodules_runAndEvent.h 60059 2012-06-27 13:00:49Z gcosmo $
+// $Id: Doxymodules_runAndEvent.h 76473 2013-11-11 10:35:14Z gcosmo $
 // The example class categories definitions for Doxygen
 
 /// \file Doxymodules_runAndEvent.h
@@ -16,20 +16,15 @@
  *  @{
  */
 
-  class RE01BosonPhysics {};
+  class RE01ActionInitialization {};
   class RE01CalorimeterHit {};
   class RE01CalorimeterParametrisation {};
   class RE01CalorimeterROGeometry {};
   class RE01CalorimeterSD {};
-  class RE01DecayPhysics {};
   class RE01DetectorConstruction {};
   class RE01DetectorParameterDef {};
-  class RE01DummySD {};
   class RE01EventAction {};
   class RE01Field {};
-  class RE01HadronPhysics {};
-  class RE01IonPhysics {};
-  class RE01LeptonPhysics {};
   class RE01PhysicsList {};
   class RE01PrimaryGeneratorAction {};
   class RE01PrimaryGeneratorMessenger {};
@@ -43,6 +38,7 @@
   class RE01TrackInformation {};
   class RE01TrackingAction {};
   class RE01Trajectory {};
+  class RE01UnknownDecayPhysics {};
 
 /** @} */
 
@@ -52,15 +48,10 @@
  *  @{
  */
 
+  class RE02ActionInitialization {};
   class RE02DetectorConstruction {};
-  class RE02EMPhysics {};
   class RE02EventAction {};
-  class RE02GeneralPhysics {};
-  class RE02HadronPhysics {};
-  class RE02IonPhysics {};
-  class RE02MuonPhysics {};
   class RE02NestedPhantomParameterisation {};
-  class RE02PhysicsList {};
   class RE02PrimaryGeneratorAction {};
   class RE02PSCellFlux {};
   class RE02PSEnergyDeposit {};
@@ -79,8 +70,8 @@
  *  @{
  */
 
+  class RE03ActionInitialization {};
   class RE03DetectorConstruction {};
-  class RE03PhysicsList {};
   class RE03PrimaryGeneratorAction {};
   class RE03UserScoreWriter {};
 
@@ -92,6 +83,7 @@
  *  @{
  */
 
+  class RE04ActionInitialization {};
   class RE04DetectorConstruction {};
   class RE04EventAction {};
   class RE04ParallelWorldConstruction {};
@@ -105,5 +97,56 @@
 
 /** @} */
 
+/** @defgroup extended_runAndEvent_RE05 RE05
+ *  RunAndEvent example RE05
+ *  @ingroup extended_runAndEvent
+ *  @{
+ */
+
+  class RE05ActionInitialization {};
+  class RE05CalorimeterHit {};
+  class RE05CalorimeterParametrisation {};
+  class RE05CalorimeterROGeometry {};
+  class RE05CalorimeterSD {};
+  class RE05DetectorConstruction {};
+  class RE05DetectorParameterDef {};
+  class RE05DummySD {};
+  class RE05EventAction {};
+  class RE05Field {};
+  class RE05MuonHit {};
+  class RE05MuonSD {};
+  class RE05PrimaryGeneratorAction {};
+  class RE05PrimaryGeneratorMessenger {};
+  class RE05RunAction {};
+  class RE05StackingAction {};
+  class RE05StackingActionMessenger {};
+  class RE05SteppingAction {};
+  class RE05SteppingVerbose {};
+  class RE05TrackerHit {};
+  class RE05TrackerParametrisation {};
+  class RE05TrackerSD {};
+  class RE05TrackingAction {};
+  class RE05WorkerInitialization {};
+
+/** @} */
+
+/** @defgroup extended_runAndEvent_RE06 RE06
+ *  RunAndEvent example RE06
+ *  @ingroup extended_runAndEvent
+ *  @{
+ */
+
+  class RE06ActionInitialization {};
+  class RE06DetectorConstruction {};
+  class RE06DetectorMessenger {};
+  class RE06ParallelWorld {};
+  class RE06PhysicsList {};
+  class RE06PrimaryGeneratorAction {};
+  class RE06RunAction {};
+  class RE06Run {};
+  class RE06SteppingVerbose {};
+  class RE06WorkerInitialization {};
+
+/** @} */
 
 /** @} */

examples/.doxygen/History

@@ -18,6 +18,12 @@ track of all tags.
      * Reverse chronological order (last date on top), please *
      ----------------------------------------------------------
 
+29/11/12 I.Hrivnacova (doxygen-V09-06-01)
+- Updated configuration files for 10.0 release
+
+17/11/12 I.Hrivnacova (doxygen-V09-06-00)
+- Updated configuration files for 10.0 release
+
 26/11/12 I.Hrivnacova (doxygen-V09-05-02)
 - Updated Doxyfile for removing .README.HowToRunTestEm1
 

examples/.doxygen/extra_stylesheet.css

@@ -0,0 +1,41 @@
+/* The standard CSS for doxygen 1.8.5 */
+/* Extension for Geant4 example documentation */
+
+/* header style */			
+#g4header {
+  color: black;
+  background-color: #CCCC99;
+  border: 1px solid #999966;
+/*  border: 10px solid white; */
+  padding-top: .5em;
+  padding-right: 1em;
+  width: 100%;
+  margin-bottom: .5em;
+  -moz-border-radius: 15px;
+}
+
+#g4header img {
+  padding-left: 1em;	
+  background: #cccc99;
+}
+
+#breadcrumb { 
+  color: #003366; 
+  background-color: #9999FF;
+  border: 0;
+  border-right: 1em solid white;
+  font-weight: bold;
+  text-align: left;
+  font-size: 90%;
+}
+
+/* overwrite default size of \section and \subsection titles: 150% */
+h1 {
+  font-size: 130%;
+}
+h2 {
+  font-size: 120%;
+}
+h3 {
+  font-size: 110%;
+}

examples/.doxygen/footer.html

@@ -0,0 +1,39 @@
+<!-- HTML footer for doxygen 1.8.5-->
+<!-- Updated for Geant4 examples documentation-->
+<!-- start footer part -->
+<!--BEGIN GENERATE_TREEVIEW-->
+<div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
+  <ul>
+    $navpath
+    <li class="footer">$generatedby
+    <a href="http://www.doxygen.org/index.html">
+    <img class="footer" src="$relpath^doxygen.png" alt="doxygen"/></a> $doxygenversion </li>
+  </ul>
+</div>
+<!--END GENERATE_TREEVIEW-->
+<!--BEGIN !GENERATE_TREEVIEW-->
+<hr class="footer"/><address class="footer"><small>
+$generatedby &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="$relpath^doxygen.png" alt="doxygen"/>
+</a> $doxygenversion
+</small></address>
+<!--END !GENERATE_TREEVIEW-->
+<hr>
+<a href="http://cern.ch/geant4/applications/index.shtml">Applications</a> | 
+<a href="http://cern.ch/geant4/support/index.shtml">User Support</a> |
+<a href="http://cern.ch/geant4/results/index.shtml">Results &amp; Publications</a> |
+<a href="http://cern.ch/geant4/collaboration/index.shtml">Collaboration</a> | 
+<a href="http://cern.ch/geant4/sitemap.shtml">Site Map</a><br />
+<p></p>
+<script type="text/javascript">
+<!--//
+var zap_domain = "cern.ch"
+var zap_user = "Gunter.Folger"
+var zap_recipient = zap_user + "@" + zap_domain
+var zap_url = "mailto:" + zap_recipient +"?subject=Feedback&body=My feedback concerns the page at: " + " " + escape(top.parent.location.href)
+document.write('<a href="' + zap_url + '" target=>Contact Webmaster</a>')
+//-->
+</script>
+<br/><br/>
+</body>
+</html>

examples/.doxygen/generate_standalone.sh

@@ -6,6 +6,7 @@
 CURDIR=`pwd`
 
 BACK_PATH2="../../../.doxygen/doc"
+BACK_PATH3="../../../../.doxygen/doc"
 BACK_PATH4="../../../../../.doxygen/doc"
 
 # generate documentation 
@@ -44,10 +45,15 @@ generate() {
 }
 
 # process examples in second level directory in extended
-for DIR in analysis/shared analysis/AnaEx01 analysis/AnaEx02 analysis/AnaEx03 electromagnetic/TestEm0 electromagnetic/TestEm1 electromagnetic/TestEm2 electromagnetic/TestEm3 electromagnetic/TestEm4 electromagnetic/TestEm5 electromagnetic/TestEm6 electromagnetic/TestEm7 electromagnetic/TestEm8 electromagnetic/TestEm9 electromagnetic/TestEm10 electromagnetic/TestEm11 electromagnetic/TestEm12 electromagnetic/TestEm13 electromagnetic/TestEm14 electromagnetic/TestEm15 electromagnetic/TestEm16 electromagnetic/TestEm17 electromagnetic/TestEm18 eventgenerator/particleGun exoticphysics/monopole geometry/transforms hadronic/Hadr00 hadronic/Hadr01 hadronic/Hadr02 hadronic/Hadr03 medical/electronScattering medical/electronScattering2 medical/fanoCavity medical/fanoCavity2 medical/GammaTherapy parallel/ParN02 parallel/ParN04 polarisation/Pol01 radioactivedecay/rdecay01 radioactivedecay/rdecay02; do
+for DIR in analysis/shared analysis/AnaEx01 analysis/AnaEx02 analysis/AnaEx03 electromagnetic/TestEm0 electromagnetic/TestEm1 electromagnetic/TestEm2 electromagnetic/TestEm3 electromagnetic/TestEm4 electromagnetic/TestEm5 electromagnetic/TestEm6 electromagnetic/TestEm7 electromagnetic/TestEm8 electromagnetic/TestEm9 electromagnetic/TestEm10 electromagnetic/TestEm11 electromagnetic/TestEm12 electromagnetic/TestEm13 electromagnetic/TestEm14 electromagnetic/TestEm15 electromagnetic/TestEm16 electromagnetic/TestEm17 electromagnetic/TestEm18 eventgenerator/particleGun exoticphysics/monopole geometry/transforms hadronic/Hadr00 hadronic/Hadr01 hadronic/Hadr02 hadronic/Hadr03 hadronic/Hadr04 hadronic/Hadr05 medical/electronScattering medical/electronScattering2 medical/fanoCavity medical/fanoCavity2 medical/GammaTherapy polarisation/Pol01 radioactivedecay/rdecay01 radioactivedecay/rdecay02; do
   generate ${DIR} ${BACK_PATH2}
 done  
 
+# process examples in third level directory in extended
+for DIR in parallel/TopC/ParN02  parallel/TopC/ParN04; do
+  generate ${DIR} ${BACK_PATH3}
+done  
+
 # process examples in fourth level directory in extended
 for DIR in  parallel/MPI/examples/exMPI01 parallel/MPI/examples/exMPI02; do
   generate ${DIR} ${BACK_PATH4}

examples/.doxygen/header.html

@@ -0,0 +1,67 @@
+<!-- HTML header for doxygen 1.8.5-->
+<!-- Updated for Geant4 examples documentation-->
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml">
+<head>
+<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
+<meta http-equiv="X-UA-Compatible" content="IE=9"/>
+<meta name="generator" content="Doxygen $doxygenversion"/>
+<!--BEGIN PROJECT_NAME--><title>$projectname: $title</title><!--END PROJECT_NAME-->
+<!--BEGIN !PROJECT_NAME--><title>$title</title><!--END !PROJECT_NAME-->
+<link href="$relpath^tabs.css" rel="stylesheet" type="text/css"/>
+<script type="text/javascript" src="$relpath^jquery.js"></script>
+<script type="text/javascript" src="$relpath^dynsections.js"></script>
+$treeview
+$search
+$mathjax
+<link href="$relpath^$stylesheet" rel="stylesheet" type="text/css" />
+$extrastylesheet
+</head>
+<body>
+<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
+
+<!--BEGIN TITLEAREA-->
+<div id="titlearea">
+<div id="g4header">
+<table cellpadding="0" cellspacing="0" width="98%">
+  <tr>
+    <td><a href="index.shtml">
+    <img alt="Geant4 Home" src="geanttiny.gif" width="164" height="40" /></a>
+    </td>
+    <td align="right" class="doNotPrint">
+    <a href="http://cern.ch/geant4/support/download.shtml">Download</a> 
+    | <a href="http://hypernews.slac.stanford.edu/HyperNews/geant4/cindex">User 
+    Forum</a> | <a href="http://cern.ch/geant4/gallery/index.html">
+    Gallery</a><br />
+    <a href="http://cern.ch/geant4/collaboration/contacts.shtml">
+    Contact Us</a><br />
+      <form method="get" action="http://www.cern.ch/cgi-bin/directory-search.pl">
+      <input type="hidden" value="No" name="SubSearch" />
+      <input type="hidden" value="url:wwwinfo.cern.ch/asd/geant4/G4UsersDocuments/
+url:geant4.web.cern.ch/geant4/G4UsersDocuments/" name="AdditionalQuery" />
+      <input type="hidden" value="searchbrowse.html" name="TemplateFile" />
+      <input type="hidden" value="http://wwwinfo.cern.ch/asd/" name="Referer" />
+      <input type="hidden" value="cern" name="qc" />
+      <input type="hidden" value="cern" name="col" />
+      <input size="35" name="qt" />
+      <input type="submit" value="Search Geant4" />
+    </form>
+    </td>
+  </tr>
+</table>
+</div>
+</div>
+<table cellspacing="6" cellpadding="0" width="100%">
+  <tr>
+    <td id="breadcrumb" colspan="4">
+    <!-- start bread crumb -->
+       <a href="http://geant4.web.cern.ch/geant4/index.shtml">Home</a> &gt;
+       <a href="http://geant4.web.cern.ch/geant4/UserDocumentation/Doxygen/examples_doc/html/index.html">Examples</a>
+    <!-- end bread crumb-->
+    </td>
+  </tr>
+</table>  
+<!--END TITLEAREA-->
+<!-- end header part -->
+
+

examples/.doxygen/images/.svn/entries

@@ -0,0 +1,62 @@
+10
+
+dir
+78244
+svn+ssh://svn.cern.ch/reps/geant4/tags/geant4/_symbols/geant4-10-00/examples/.doxygen/images
+svn+ssh://svn.cern.ch/reps/geant4
+
+
+
+2013-11-11T10:35:14.738616Z
+76473
+gcosmo
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+82ad68bf-922b-4865-b672-c5fc3b8c97f6
+
+geanttiny.gif
+file
+
+
+
+
+2013-12-06T10:04:15.000000Z
+db957d4570aca952bbb68c61762c9c59
+2013-11-09T16:10:36.814273Z
+76400
+ihrivnac
+has-props
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+2690
+

examples/.doxygen/images/.svn/prop-base/geanttiny.gif.svn-base

@@ -0,0 +1,5 @@
+K 13
+svn:mime-type
+V 9
+image/gif
+END