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<!-- navigation toc: --> <li><a href="._NeuralNet-bs001.html#___sec0" style="font-size: 80%;"><b>Neural networks</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs002.html#___sec1" style="font-size: 80%;"><b>Artificial neurons</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs003.html#___sec2" style="font-size: 80%;"><b>Neural network types</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs004.html#___sec3" style="font-size: 80%;"><b>Feed-forward neural networks</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs005.html#___sec4" style="font-size: 80%;"><b>Convolutional Neural Network</b></a></li>
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<!-- navigation toc: --> <li><a href="._NeuralNet-bs007.html#___sec6" style="font-size: 80%;"><b>Other types of networks</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs008.html#___sec7" style="font-size: 80%;"><b>Multilayer perceptrons</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs009.html#___sec8" style="font-size: 80%;"><b>Why multilayer perceptrons?</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs010.html#___sec9" style="font-size: 80%;"><b>Mathematical model</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs011.html#___sec10" style="font-size: 80%;"><b>Mathematical model</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs012.html#___sec11" style="font-size: 80%;"><b>Mathematical model</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs013.html#___sec12" style="font-size: 80%;"><b>Mathematical model</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs014.html#___sec13" style="font-size: 80%;"><b>Mathematical model</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs015.html#___sec14" style="font-size: 80%;">&nbsp;&nbsp;&nbsp;Matrix-vector notation</a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs016.html#___sec15" style="font-size: 80%;">&nbsp;&nbsp;&nbsp;Matrix-vector notation and activation</a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs017.html#___sec16" style="font-size: 80%;">&nbsp;&nbsp;&nbsp;Activation functions</a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs018.html#___sec17" style="font-size: 80%;">&nbsp;&nbsp;&nbsp;Activation functions, Logistic and Hyperbolic ones</a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs019.html#___sec18" style="font-size: 80%;">&nbsp;&nbsp;&nbsp;Relevance</a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs020.html#___sec19" style="font-size: 80%;"><b>The multilayer perceptron (MLP)</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs021.html#___sec20" style="font-size: 80%;"><b>From one to many layers, the universal approximation theorem</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs022.html#___sec21" style="font-size: 80%;"><b>Deriving the back propagation code for a multilayer perceptron model</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs023.html#___sec22" style="font-size: 80%;"><b>Definitions</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs024.html#___sec23" style="font-size: 80%;"><b>Derivatives and the chain rule</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs025.html#___sec24" style="font-size: 80%;"><b>Derivative of the cost function</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs026.html#___sec25" style="font-size: 80%;"><b>Bringing it together, first back propagation equation</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs027.html#___sec26" style="font-size: 80%;"><b>Derivatives in terms of \( z_j^L \)</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs028.html#___sec27" style="font-size: 80%;"><b>Bringing it together</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs029.html#___sec28" style="font-size: 80%;"><b>Final back propagating equation</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs030.html#___sec29" style="font-size: 80%;"><b>Setting up the Back propagation algorithm</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs031.html#___sec30" style="font-size: 80%;"><b>Setting up a Multi-layer perceptron model for classification</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs032.html#___sec31" style="font-size: 80%;"><b>Defining the cost function</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs033.html#___sec32" style="font-size: 80%;"><b>Example: binary classification problem</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs034.html#___sec33" style="font-size: 80%;"><b>The Softmax function</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs035.html#___sec34" style="font-size: 80%;"><b>Developing a code for doing neural networks with back propagation</b></a></li>
<!-- navigation toc: --> <li><a href="#___sec35" style="font-size: 80%;"><b>Collect and pre-process data</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs037.html#___sec36" style="font-size: 80%;"><b>Train and test datasets</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs038.html#___sec37" style="font-size: 80%;"><b>Define model and architecture</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs039.html#___sec38" style="font-size: 80%;"><b>Layers</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs040.html#___sec39" style="font-size: 80%;"><b>Weights and biases</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs041.html#___sec40" style="font-size: 80%;"><b>Feed-forward pass</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs042.html#___sec41" style="font-size: 80%;"><b>Matrix multiplications</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs043.html#___sec42" style="font-size: 80%;"><b>Choose cost function and optimizer</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs044.html#___sec43" style="font-size: 80%;"><b>Optimizing the cost function</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs045.html#___sec44" style="font-size: 80%;"><b>Regularization</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs046.html#___sec45" style="font-size: 80%;"><b>Matrix multiplication</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs047.html#___sec46" style="font-size: 80%;"><b>Improving performance</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs048.html#___sec47" style="font-size: 80%;"><b>Full object-oriented implementation</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs049.html#___sec48" style="font-size: 80%;"><b>Evaluate model performance on test data</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs050.html#___sec49" style="font-size: 80%;"><b>Adjust hyperparameters</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs051.html#___sec50" style="font-size: 80%;"><b>Visualization</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs052.html#___sec51" style="font-size: 80%;"><b>scikit-learn implementation</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs053.html#___sec52" style="font-size: 80%;"><b>Visualization</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs054.html#___sec53" style="font-size: 80%;"><b>Building neural networks in Tensorflow and Keras</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs055.html#___sec54" style="font-size: 80%;"><b>Tensorflow</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs056.html#___sec55" style="font-size: 80%;"><b>Collect and pre-process data</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs057.html#___sec56" style="font-size: 80%;"><b>Using TensorFlow backend</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs058.html#___sec57" style="font-size: 80%;"><b>Optimizing and using gradient descent</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs059.html#___sec58" style="font-size: 80%;"><b>Using Keras</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs060.html#___sec59" style="font-size: 80%;"><b>Which activation function should I use?</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs061.html#___sec60" style="font-size: 80%;"><b>Is the Logistic activation function (Sigmoid) our choice?</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs062.html#___sec61" style="font-size: 80%;"><b>The derivative of the Logistic funtion</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs063.html#___sec62" style="font-size: 80%;"><b>The RELU function family</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs064.html#___sec63" style="font-size: 80%;"><b>Which activation function should we use?</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs065.html#___sec64" style="font-size: 80%;"><b>A top-down perspective on Neural networks</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs066.html#___sec65" style="font-size: 80%;"><b>Limitations of supervised learning with deep networks</b></a></li>
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<h2 id="___sec35" class="anchor">Collect and pre-process data </h2>
<p>
Here we will be using the MNIST dataset, which is readily available through the <b>scikit-learn</b>
package. You may also find it for example <a href="http://yann.lecun.com/exdb/mnist/" target="_self">here</a>.
The <em>MNIST</em> (Modified National Institute of Standards and Technology) database is a large database
of handwritten digits that is commonly used for training various image processing systems.
The MNIST dataset consists of 70 000 images of size \( 28\times 28 \) pixels, each labeled from 0 to 9.
The scikit-learn dataset we will use consists of a selection of 1797 images of size \( 8\times 8 \) collected and processed from this database.
<p>
To feed data into a feed-forward neural network we need to represent
the inputs as a design/feature matrix \( X = (n_{inputs}, n_{features}) \). Each
row represents an <em>input</em>, in this case a handwritten digit, and
each column represents a <em>feature</em>, in this case a pixel. The
correct answers, also known as <em>labels</em> or <em>targets</em> are
represented as a 1D array of integers
\( Y = (n_{inputs}) = (5, 3, 1, 8,...) \).
<p>
As an example, say we want to build a neural network using supervised learning to predict Body-Mass Index (BMI) from
measurements of height (in m)
and weight (in kg). If we have measurements of 5 people the design/feature matrix could be for example:
$$ X = \begin{bmatrix}
1.85 &amp; 81\\
1.71 &amp; 65\\
1.95 &amp; 103\\
1.55 &amp; 42\\
1.63 &amp; 56
\end{bmatrix} ,$$
<p>
and the targets would be:
$$ Y = (23.7, 22.2, 27.1, 17.5, 21.1) $$
<p>
Since each input image is a 2D matrix, we need to flatten the image
(i.e. "unravel" the 2D matrix into a 1D array) to turn the data into a
design/feature matrix. This means we lose all spatial information in the
image, such as locality and translational invariance. More complicated
architectures such as Convolutional Neural Networks can take advantage
of such information, and are most commonly applied when analyzing
images.
<p>
<!-- code=python (!bc pycod) typeset with pygments style "default" -->
<div class="highlight" style="background: #f8f8f8"><pre style="line-height: 125%"><span></span><span style="color: #408080; font-style: italic"># import necessary packages</span>
<span style="color: #008000; font-weight: bold">import</span> <span style="color: #0000FF; font-weight: bold">numpy</span> <span style="color: #008000; font-weight: bold">as</span> <span style="color: #0000FF; font-weight: bold">np</span>
<span style="color: #008000; font-weight: bold">import</span> <span style="color: #0000FF; font-weight: bold">matplotlib.pyplot</span> <span style="color: #008000; font-weight: bold">as</span> <span style="color: #0000FF; font-weight: bold">plt</span>
<span style="color: #008000; font-weight: bold">from</span> <span style="color: #0000FF; font-weight: bold">sklearn</span> <span style="color: #008000; font-weight: bold">import</span> datasets
<span style="color: #408080; font-style: italic"># ensure the same random numbers appear every time</span>
np<span style="color: #666666">.</span>random<span style="color: #666666">.</span>seed(<span style="color: #666666">0</span>)
<span style="color: #408080; font-style: italic"># display images in notebook</span>
<span style="color: #666666">%</span>matplotlib inline
plt<span style="color: #666666">.</span>rcParams[<span style="color: #BA2121">&#39;figure.figsize&#39;</span>] <span style="color: #666666">=</span> (<span style="color: #666666">12</span>,<span style="color: #666666">12</span>)
<span style="color: #408080; font-style: italic"># download MNIST dataset</span>
digits <span style="color: #666666">=</span> datasets<span style="color: #666666">.</span>load_digits()
<span style="color: #408080; font-style: italic"># define inputs and labels</span>
inputs <span style="color: #666666">=</span> digits<span style="color: #666666">.</span>images
labels <span style="color: #666666">=</span> digits<span style="color: #666666">.</span>target
<span style="color: #008000; font-weight: bold">print</span>(<span style="color: #BA2121">&quot;inputs = (n_inputs, pixel_width, pixel_height) = &quot;</span> <span style="color: #666666">+</span> <span style="color: #008000">str</span>(inputs<span style="color: #666666">.</span>shape))
<span style="color: #008000; font-weight: bold">print</span>(<span style="color: #BA2121">&quot;labels = (n_inputs) = &quot;</span> <span style="color: #666666">+</span> <span style="color: #008000">str</span>(labels<span style="color: #666666">.</span>shape))
<span style="color: #408080; font-style: italic"># flatten the image</span>
<span style="color: #408080; font-style: italic"># the value -1 means dimension is inferred from the remaining dimensions: 8x8 = 64</span>
n_inputs <span style="color: #666666">=</span> <span style="color: #008000">len</span>(inputs)
inputs <span style="color: #666666">=</span> inputs<span style="color: #666666">.</span>reshape(n_inputs, <span style="color: #666666">-1</span>)
<span style="color: #008000; font-weight: bold">print</span>(<span style="color: #BA2121">&quot;X = (n_inputs, n_features) = &quot;</span> <span style="color: #666666">+</span> <span style="color: #008000">str</span>(inputs<span style="color: #666666">.</span>shape))
<span style="color: #408080; font-style: italic"># choose some random images to display</span>
indices <span style="color: #666666">=</span> np<span style="color: #666666">.</span>arange(n_inputs)
random_indices <span style="color: #666666">=</span> np<span style="color: #666666">.</span>random<span style="color: #666666">.</span>choice(indices, size<span style="color: #666666">=5</span>)
<span style="color: #008000; font-weight: bold">for</span> i, image <span style="color: #AA22FF; font-weight: bold">in</span> <span style="color: #008000">enumerate</span>(digits<span style="color: #666666">.</span>images[random_indices]):
plt<span style="color: #666666">.</span>subplot(<span style="color: #666666">1</span>, <span style="color: #666666">5</span>, i<span style="color: #666666">+1</span>)
plt<span style="color: #666666">.</span>axis(<span style="color: #BA2121">&#39;off&#39;</span>)
plt<span style="color: #666666">.</span>imshow(image, cmap<span style="color: #666666">=</span>plt<span style="color: #666666">.</span>cm<span style="color: #666666">.</span>gray_r, interpolation<span style="color: #666666">=</span><span style="color: #BA2121">&#39;nearest&#39;</span>)
plt<span style="color: #666666">.</span>title(<span style="color: #BA2121">&quot;Label: </span><span style="color: #BB6688; font-weight: bold">%d</span><span style="color: #BA2121">&quot;</span> <span style="color: #666666">%</span> digits<span style="color: #666666">.</span>target[random_indices[i]])
plt<span style="color: #666666">.</span>show()
</pre></div>
<p>
<p>
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