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FYS-STK4155/doc/src/Regression/Bootstrap.py
T
2020-09-14 10:52:04 +02:00

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Python

from numpy import *
from numpy.random import randint, randn
from time import time
import matplotlib.mlab as mlab
import matplotlib.pyplot as plt
# Returns mean of bootstrap samples
def stat(data):
return mean(data)
# Bootstrap algorithm
def bootstrap(data, statistic, R):
t = zeros(R); n = len(data); inds = arange(n); t0 = time()
# non-parametric bootstrap
for i in range(R):
t[i] = statistic(data[randint(0,n,n)])
# analysis
print("Runtime: %g sec" % (time()-t0)); print("Bootstrap Statistics :")
print("original bias std. error")
print("%8g %8g %14g %15g" % (statistic(data), std(data),mean(t),std(t)))
return t
mu, sigma = 100, 15
datapoints = 10000
x = mu + sigma*random.randn(datapoints)
# bootstrap returns the data sample
t = bootstrap(x, stat, datapoints)
# the histogram of the bootstrapped data
n, binsboot, patches = plt.hist(t, 50, facecolor='red', alpha=0.75)
# add a 'best fit' line
#y = mlab.normpdf( binsboot, mean(t), std(t))
#lt = plt.plot(binsboot, y, 'r--', linewidth=1)
plt.xlabel('Smarts')
plt.ylabel('Probability')
plt.axis([95, 105, 0, 10.0])
plt.grid(True)
plt.show()