Files
FYS-STK4155/doc/pub/LogReg/html/._LogReg-bs021.html
T
2018-10-11 11:27:08 +02:00

231 lines
10 KiB
HTML

<!--
Automatically generated HTML file from DocOnce source
(https://github.com/hplgit/doconce/)
-->
<html>
<head>
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
<meta name="generator" content="DocOnce: https://github.com/hplgit/doconce/" />
<meta name="description" content="Data Analysis and Machine Learning: Logistic Regression">
<title>Data Analysis and Machine Learning: Logistic Regression</title>
<!-- Bootstrap style: bootstrap -->
<link href="https://netdna.bootstrapcdn.com/bootstrap/3.1.1/css/bootstrap.min.css" rel="stylesheet">
<!-- not necessary
<link href="https://netdna.bootstrapcdn.com/font-awesome/4.0.3/css/font-awesome.css" rel="stylesheet">
-->
<style type="text/css">
/* Add scrollbar to dropdown menus in bootstrap navigation bar */
.dropdown-menu {
height: auto;
max-height: 400px;
overflow-x: hidden;
}
/* Adds an invisible element before each target to offset for the navigation
bar */
.anchor::before {
content:"";
display:block;
height:50px; /* fixed header height for style bootstrap */
margin:-50px 0 0; /* negative fixed header height */
}
</style>
</head>
<!-- tocinfo
{'highest level': 2,
'sections': [('Logistic Regression', 2, None, '___sec0'),
('Optimization and Deep learning', 2, None, '___sec1'),
('Basics', 2, None, '___sec2'),
('Linear classifier', 2, None, '___sec3'),
('Some selected properties', 2, None, '___sec4'),
('The logistic function', 2, None, '___sec5'),
('Two parameters', 2, None, '___sec6'),
('Maximum likelihood', 2, None, '___sec7'),
('The cost function rewritten', 2, None, '___sec8'),
('Minimizing the cross entropy', 2, None, '___sec9'),
('A more compact expression', 2, None, '___sec10'),
('Extending to more predictors', 2, None, '___sec11'),
('Including more classes', 2, None, '___sec12'),
('The Softmax function', 2, None, '___sec13'),
('A _scikit-learn_ example', 2, None, '___sec14'),
('A simple classification problem', 2, None, '___sec15'),
('The two-dimensional Ising model, Predicting phase transition '
'of the two-dimensional Ising model',
2,
None,
'___sec16'),
('Reading in the data', 2, None, '___sec17'),
('Logistic regression', 2, None, '___sec18'),
('Exploring the logistic regression', 2, None, '___sec19'),
('Accuracy of a classification model', 2, None, '___sec20'),
('Analyzing the results', 2, None, '___sec21')]}
end of tocinfo -->
<body>
<script type="text/x-mathjax-config">
MathJax.Hub.Config({
TeX: {
equationNumbers: { autoNumber: "none" },
extensions: ["AMSmath.js", "AMSsymbols.js", "autobold.js", "color.js"]
}
});
</script>
<script type="text/javascript" async
src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.1/MathJax.js?config=TeX-AMS-MML_HTMLorMML">
</script>
<!-- Bootstrap navigation bar -->
<div class="navbar navbar-default navbar-fixed-top">
<div class="navbar-header">
<button type="button" class="navbar-toggle" data-toggle="collapse" data-target=".navbar-responsive-collapse">
<span class="icon-bar"></span>
<span class="icon-bar"></span>
<span class="icon-bar"></span>
</button>
<a class="navbar-brand" href="LogReg-bs.html">Data Analysis and Machine Learning: Logistic Regression</a>
</div>
<div class="navbar-collapse collapse navbar-responsive-collapse">
<ul class="nav navbar-nav navbar-right">
<li class="dropdown">
<a href="#" class="dropdown-toggle" data-toggle="dropdown">Contents <b class="caret"></b></a>
<ul class="dropdown-menu">
<!-- navigation toc: --> <li><a href="._LogReg-bs001.html#___sec0" style="font-size: 80%;">Logistic Regression</a></li>
<!-- navigation toc: --> <li><a href="._LogReg-bs002.html#___sec1" style="font-size: 80%;">Optimization and Deep learning</a></li>
<!-- navigation toc: --> <li><a href="._LogReg-bs003.html#___sec2" style="font-size: 80%;">Basics</a></li>
<!-- navigation toc: --> <li><a href="._LogReg-bs004.html#___sec3" style="font-size: 80%;">Linear classifier</a></li>
<!-- navigation toc: --> <li><a href="._LogReg-bs005.html#___sec4" style="font-size: 80%;">Some selected properties</a></li>
<!-- navigation toc: --> <li><a href="._LogReg-bs006.html#___sec5" style="font-size: 80%;">The logistic function</a></li>
<!-- navigation toc: --> <li><a href="._LogReg-bs007.html#___sec6" style="font-size: 80%;">Two parameters</a></li>
<!-- navigation toc: --> <li><a href="._LogReg-bs008.html#___sec7" style="font-size: 80%;">Maximum likelihood</a></li>
<!-- navigation toc: --> <li><a href="._LogReg-bs009.html#___sec8" style="font-size: 80%;">The cost function rewritten</a></li>
<!-- navigation toc: --> <li><a href="._LogReg-bs010.html#___sec9" style="font-size: 80%;">Minimizing the cross entropy</a></li>
<!-- navigation toc: --> <li><a href="._LogReg-bs011.html#___sec10" style="font-size: 80%;">A more compact expression</a></li>
<!-- navigation toc: --> <li><a href="._LogReg-bs012.html#___sec11" style="font-size: 80%;">Extending to more predictors</a></li>
<!-- navigation toc: --> <li><a href="._LogReg-bs013.html#___sec12" style="font-size: 80%;">Including more classes</a></li>
<!-- navigation toc: --> <li><a href="._LogReg-bs014.html#___sec13" style="font-size: 80%;">The Softmax function</a></li>
<!-- navigation toc: --> <li><a href="._LogReg-bs015.html#___sec14" style="font-size: 80%;">A <b>scikit-learn</b> example</a></li>
<!-- navigation toc: --> <li><a href="._LogReg-bs016.html#___sec15" style="font-size: 80%;">A simple classification problem</a></li>
<!-- navigation toc: --> <li><a href="._LogReg-bs017.html#___sec16" style="font-size: 80%;">The two-dimensional Ising model, Predicting phase transition of the two-dimensional Ising model</a></li>
<!-- navigation toc: --> <li><a href="._LogReg-bs018.html#___sec17" style="font-size: 80%;">Reading in the data</a></li>
<!-- navigation toc: --> <li><a href="._LogReg-bs019.html#___sec18" style="font-size: 80%;">Logistic regression</a></li>
<!-- navigation toc: --> <li><a href="._LogReg-bs020.html#___sec19" style="font-size: 80%;">Exploring the logistic regression</a></li>
<!-- navigation toc: --> <li><a href="#___sec20" style="font-size: 80%;">Accuracy of a classification model</a></li>
<!-- navigation toc: --> <li><a href="._LogReg-bs022.html#___sec21" style="font-size: 80%;">Analyzing the results</a></li>
</ul>
</li>
</ul>
</div>
</div>
</div> <!-- end of navigation bar -->
<div class="container">
<p>&nbsp;</p><p>&nbsp;</p><p>&nbsp;</p> <!-- add vertical space -->
<a name="part0021"></a>
<!-- !split -->
<h2 id="___sec20" class="anchor">Accuracy of a classification model </h2>
<p>
To determine how well a classification model is performing we count
the number of correctly labeled classes and divide by the number of
classes in total. The accuracy is thus given by
$$
\begin{align}
a(y, \hat{y}) = \frac{1}{n}\sum_{i = 1}^{n} I(y_i = \hat{y}_i),
\tag{7}
\end{align}
$$
<p>
where \( I(y_i = \hat{y}_i) \) is the indicator function given by
$$
\begin{align}
I(x = y) = \begin{array}{cc}
1 & x = y, \\
0 & x \neq y.
\end{array}
\tag{8}
\end{align}$$
<p>
This is the accuracy provided by Scikit-learn when using <b>sklearn.metrics.accuracyscore</b>.
<p>
Below we compute the accuracy of the best fit model on the training data (which should give a good accuracy), the test data (which has not been shown to the model) and the critical data (completely new data that needs to be extrapolated).
<p>
<!-- code=python (!bc pycod) typeset with pygments style "default" -->
<div class="highlight" style="background: #f8f8f8"><pre style="line-height: 125%"><span></span>train_accuracy <span style="color: #666666">=</span> skm<span style="color: #666666">.</span>accuracy_score(y_train, clf<span style="color: #666666">.</span>predict(X_train))
test_accuracy <span style="color: #666666">=</span> skm<span style="color: #666666">.</span>accuracy_score(y_test, clf<span style="color: #666666">.</span>predict(X_test))
critical_accuracy <span style="color: #666666">=</span> skm<span style="color: #666666">.</span>accuracy_score(labels[critical], clf<span style="color: #666666">.</span>predict(data[critical]))
<span style="color: #008000; font-weight: bold">print</span> (<span style="color: #BA2121">&quot;Accuracy on train data: {0}&quot;</span><span style="color: #666666">.</span>format(train_accuracy))
<span style="color: #008000; font-weight: bold">print</span> (<span style="color: #BA2121">&quot;Accuracy on test data: {0}&quot;</span><span style="color: #666666">.</span>format(test_accuracy))
<span style="color: #008000; font-weight: bold">print</span> (<span style="color: #BA2121">&quot;Accuracy on critical data: {0}&quot;</span><span style="color: #666666">.</span>format(critical_accuracy))
</pre></div>
<p>
We can see that we get quite good accuracy on the training data, but gradually worsening accuracy on the test and critical data.
<p>
<p>
<!-- navigation buttons at the bottom of the page -->
<ul class="pagination">
<li><a href="._LogReg-bs020.html">&laquo;</a></li>
<li><a href="._LogReg-bs000.html">1</a></li>
<li><a href="">...</a></li>
<li><a href="._LogReg-bs013.html">14</a></li>
<li><a href="._LogReg-bs014.html">15</a></li>
<li><a href="._LogReg-bs015.html">16</a></li>
<li><a href="._LogReg-bs016.html">17</a></li>
<li><a href="._LogReg-bs017.html">18</a></li>
<li><a href="._LogReg-bs018.html">19</a></li>
<li><a href="._LogReg-bs019.html">20</a></li>
<li><a href="._LogReg-bs020.html">21</a></li>
<li class="active"><a href="._LogReg-bs021.html">22</a></li>
<li><a href="._LogReg-bs022.html">23</a></li>
<li><a href="._LogReg-bs022.html">&raquo;</a></li>
</ul>
<!-- ------------------- end of main content --------------- -->
</div> <!-- end container -->
<!-- include javascript, jQuery *first* -->
<script src="https://ajax.googleapis.com/ajax/libs/jquery/1.10.2/jquery.min.js"></script>
<script src="https://netdna.bootstrapcdn.com/bootstrap/3.0.0/js/bootstrap.min.js"></script>
<!-- Bootstrap footer
<footer>
<a href="http://..."><img width="250" align=right src="http://..."></a>
</footer>
-->
<center style="font-size:80%">
<!-- copyright only on the titlepage -->
</center>
</body>
</html>