mhjensen
268 lines
9.0 KiB
TeX
268 lines
9.0 KiB
TeX
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\fancyfoot[C]{{\footnotesize \copyright\ 1999-2018, "Data Analysis and Machine Learning FYS-STK3155/FYS4155":"http://www.uio.no/studier/emner/matnat/fys/FYS3155/index-eng.html". Released under CC Attribution-NonCommercial 4.0 license}}
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\begin{document}
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% matching end for #ifdef PREAMBLE
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\newcommand{\exercisesection}[1]{\subsection*{#1}}
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% ------------------- main content ----------------------
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% ----------------- title -------------------------
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\thispagestyle{empty}
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\begin{center}
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{\LARGE\bf
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\begin{spacing}{1.25}
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Homework 1
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\end{spacing}
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}
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\end{center}
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% ----------------- author(s) -------------------------
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\begin{center}
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{\bf \href{{http://www.uio.no/studier/emner/matnat/fys/FYS3155/index-eng.html}}{Data Analysis and Machine Learning FYS-STK3155/FYS4155}}
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\end{center}
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\begin{center}
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% List of all institutions:
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\centerline{{\small Department of Physics, University of Oslo, Norway}}
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\end{center}
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% ----------------- end author(s) -------------------------
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% --- begin date ---
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\begin{center}
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Aug 30, 2018
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% --- end date ---
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\vspace{1cm}
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\subsection*{Exercise 1}
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The first exercise here is of a mere technical art. We want you to have
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\begin{itemize}
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\item git as a version control software and to establish a user account on a provider like GitHub. Other providers like GitLab etc are equally fine. You can also use the University of Oslo \href{{https://www.uio.no/tjenester/it/maskin/filer/versjonskontroll/github.html}}{GitHub facilities}.
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\item Install various Python packages
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\end{itemize}
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\noindent
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We will make extensive use of Python as programming language and its
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myriad of available libraries. You will find
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IPython/Jupyter notebooks invaluable in your work. You can run \textbf{R}
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codes in the Jupyter/IPython notebooks, with the immediate benefit of
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visualizing your data. You can also use compiled languages like C++,
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Rust, Fortran etc if you prefer. The focus in these lectures will be
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on Python.
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If you have Python installed (we recommend Python3) and you feel
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pretty familiar with installing different packages, we recommend that
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you install the following Python packages via \textbf{pip} as
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\begin{enumerate}
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\item pip install numpy scipy matplotlib ipython scikit-learn sympy pandas pillow
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\end{enumerate}
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\noindent
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For \textbf{Tensorflow}, we recommend following the instructions in the text of
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\href{{http://shop.oreilly.com/product/0636920052289.do}}{Aurelien Geron, Hands‑On Machine Learning with Scikit‑Learn and TensorFlow, O'Reilly}
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We will come back to \textbf{tensorflow} later.
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For Python3, replace \textbf{pip} with \textbf{pip3}.
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For OSX users we recommend, after having installed Xcode, to
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install \textbf{brew}. Brew allows for a seamless installation of additional
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software via for example
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\begin{enumerate}
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\item brew install python3
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\end{enumerate}
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\noindent
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For Linux users, with its variety of distributions like for example the widely popular Ubuntu distribution,
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you can use \textbf{pip} as well and simply install Python as
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\begin{enumerate}
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\item sudo apt-get install python3 (or python for pyhton2.7)
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\end{enumerate}
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\noindent
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If you don't want to perform these operations separately and venture
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into the hassle of exploring how to set up dependencies and paths, we
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recommend two widely used distrubutions which set up all relevant
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dependencies for Python, namely
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\begin{itemize}
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\item \href{{https://docs.anaconda.com/}}{Anaconda},
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\end{itemize}
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\noindent
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which is an open source
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distribution of the Python and R programming languages for large-scale
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data processing, predictive analytics, and scientific computing, that
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aims to simplify package management and deployment. Package versions
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are managed by the package management system \textbf{conda}.
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\begin{itemize}
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\item \href{{https://www.enthought.com/product/canopy/}}{Enthought canopy}
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\end{itemize}
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\noindent
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is a Python
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distribution for scientific and analytic computing distribution and
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analysis environment, available for free and under a commercial
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license.
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We recommend using \textbf{Anaconda}.
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\subsection*{Exercise 2}
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We will generate our own dataset for a function $y(x)$ where $x \in [0,1]$ and defined by random numbers computed with the uniform distribution. The function $y$ is a quadratic polynomial in $x$ with added stochastic noise according to the normal distribution $\cal {N}(0,1)$.
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The following simple Python instructions define our $x$ and $y$ values (with 100 data points).
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\begin{print}
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x = np.random.rand(100,1)
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y = 5*x*x+0.1*np.random.randn(100,1)
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\end{print}
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\begin{enumerate}
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\item Write your own code (following the examples under the \href{{https://compphysics.github.io/MachineLearning/doc/pub/Regression/html/Regression-bs.html}}{regression slides}) for computing the parametrization of the data set fitting a second-order polynomial.
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\item Use thereafter \textbf{scikit-learn} (see again the examples in the regression slides) and compare with your own code.
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\item Using scikit-learn, compute also the mean square error, a risk metric corresponding to the expected value of the squared (quadratic) error defined as
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\end{enumerate}
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\noindent
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\[ MSE(\hat{y},\hat{\tilde{y}}) = \frac{1}{n}
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\sum_{i=0}^{n-1}(y_i-\tilde{y}_i)^2,
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\]
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and the $R^2$ score function.
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If $\tilde{\hat{y}}_i$ is the predicted value of the $i-th$ sample and $y_i$ is the corresponding true value, then the score $R^2$ is defined as
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\[
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R^2(\hat{y}, \tilde{\hat{y}}) = 1 - \frac{\sum_{i=0}^{n - 1} (y_i - \tilde{y}_i)^2}{\sum_{i=0}^{n - 1} (y_i - \bar{y})^2},
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\]
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where we have defined the mean value of $\hat{y}$ as
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\[
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\bar{y} = \frac{1}{n} \sum_{i=0}^{n - 1} y_i.
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\]
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You can use the functionality included in scikit-learn. If you feel for it, you can use your own program and define functions which compute the above two functions.
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Discuss the meaning of these results. Try also to vary the coefficient in front of the added stochastic noise term and discuss the quality of the fits.
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\subsection*{Exercise 3, variance of the parameters $\beta$ in linear regression}
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Show that the variance of the parameters $\beta$ in the linear regression method (chapter 3, equation (3.8) of \href{{https://www.springer.com/gp/book/9780387848570}}{Trevor Hastie, Robert Tibshirani, Jerome H. Friedman, The Elements of Statistical Learning, Springer}) is given as
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\[
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\mathrm{Var}(\hat{\beta}) = \left(\hat{X}^T\hat{X}\right)^{-1}\sigma^2,
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\]
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with
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\[
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\sigma^2 = \frac{1}{N-p-1}\sum_{i=1}^{N} (y_i-\tilde{y}_i)^2,
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\]
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where we have assumed that we fit a function of degree $p-1$ (for example a polynomial in $x$).
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% ------------------- end of main content ---------------
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\end{document}
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