Morten Hjorth-Jensen
673 lines
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Applied Data Analysis and Machine Learning
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<p aria-level="2" class="caption" role="heading"><span class="caption-text">Review of Statistics with Resampling Techniques and Linear Algebra</span></p>
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<li class="toctree-l1"><a class="reference internal" href="statistics.html">1. Elements of Probability Theory and Statistical Data Analysis</a></li>
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<li class="toctree-l1"><a class="reference internal" href="linalg.html">2. Linear Algebra, Handling of Arrays and more Python Features</a></li>
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</ul>
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<p aria-level="2" class="caption" role="heading"><span class="caption-text">From Regression to Support Vector Machines</span></p>
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<li class="toctree-l1"><a class="reference internal" href="chapter1.html">3. Linear Regression</a></li>
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<li class="toctree-l1"><a class="reference internal" href="chapter2.html">4. Ridge and Lasso Regression</a></li>
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<li class="toctree-l1"><a class="reference internal" href="chapter3.html">5. Resampling Methods</a></li>
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<li class="toctree-l1"><a class="reference internal" href="chapter4.html">6. Logistic Regression</a></li>
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<li class="toctree-l1"><a class="reference internal" href="chapteroptimization.html">7. Optimization, the central part of any Machine Learning algortithm</a></li>
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<li class="toctree-l1"><a class="reference internal" href="chapter5.html">8. Support Vector Machines, overarching aims</a></li>
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<p aria-level="2" class="caption" role="heading"><span class="caption-text">Decision Trees, Ensemble Methods and Boosting</span></p>
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<li class="toctree-l1"><a class="reference internal" href="chapter6.html">9. Decision trees, overarching aims</a></li>
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<li class="toctree-l1"><a class="reference internal" href="chapter7.html">10. Ensemble Methods: From a Single Tree to Many Trees and Extreme Boosting, Meet the Jungle of Methods</a></li>
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<p aria-level="2" class="caption" role="heading"><span class="caption-text">Dimensionality Reduction</span></p>
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<li class="toctree-l1"><a class="reference internal" href="chapter8.html">11. Basic ideas of the Principal Component Analysis (PCA)</a></li>
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<li class="toctree-l1"><a class="reference internal" href="clustering.html">12. Clustering and Unsupervised Learning</a></li>
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<p aria-level="2" class="caption" role="heading"><span class="caption-text">Deep Learning Methods</span></p>
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<li class="toctree-l1"><a class="reference internal" href="chapter9.html">13. Neural networks</a></li>
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<li class="toctree-l1"><a class="reference internal" href="chapter10.html">14. Building a Feed Forward Neural Network</a></li>
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<li class="toctree-l1"><a class="reference internal" href="chapter11.html">15. Solving Differential Equations with Deep Learning</a></li>
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<li class="toctree-l1"><a class="reference internal" href="chapter12.html">16. Convolutional Neural Networks</a></li>
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<li class="toctree-l1"><a class="reference internal" href="chapter13.html">17. Recurrent neural networks: Overarching view</a></li>
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<p aria-level="2" class="caption" role="heading"><span class="caption-text">Weekly material, notes and exercises</span></p>
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<li class="toctree-l1"><a class="reference internal" href="exercisesweek34.html">Exercises week 34</a></li>
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<li class="toctree-l1"><a class="reference internal" href="week34.html">Week 34: Introduction to the course, Logistics and Practicalities</a></li>
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<li class="toctree-l1"><a class="reference internal" href="exercisesweek35.html">Exercises week 35</a></li>
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<li class="toctree-l1"><a class="reference internal" href="week35.html">Week 35: From Ordinary Linear Regression to Ridge and Lasso Regression</a></li>
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<li class="toctree-l1 current active"><a class="current reference internal" href="#">Exercises week 36</a></li>
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<li class="toctree-l1"><a class="reference internal" href="week36.html">Week 36: Statistical interpretation of Linear Regression and Resampling techniques</a></li>
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<li class="toctree-l1"><a class="reference internal" href="exercisesweek37.html">Exercises week 37</a></li>
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<li class="toctree-l1"><a class="reference internal" href="week37.html">Week 37: Statistical interpretations and Resampling Methods</a></li>
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<li class="toctree-l1"><a class="reference internal" href="exercisesweek38.html">Exercises week 38</a></li>
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<li class="toctree-l1"><a class="reference internal" href="week38.html">Week 38: Logistic Regression and Optimization</a></li>
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<li class="toctree-l1"><a class="reference internal" href="project1.html">Project 1 on Machine Learning, deadline October 9 (midnight), 2023</a></li>
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<h1>Exercises week 36</h1>
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<h2> Contents </h2>
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<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#overarching-aims-of-the-exercises-this-week">Overarching aims of the exercises this week</a></li>
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<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#exercise-1-analytical-exercises">Exercise 1: Analytical exercises</a><ul class="nav section-nav flex-column">
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<li class="toc-h3 nav-item toc-entry"><a class="reference internal nav-link" href="#a-expression-for-ridge-regression">a) Expression for Ridge regression</a></li>
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<li class="toc-h3 nav-item toc-entry"><a class="reference internal nav-link" href="#b-the-singular-value-decomposition">b) The singular value decomposition</a></li>
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<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#exercise-2-adding-ridge-regression">Exercise 2: Adding Ridge Regression</a></li>
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<!-- HTML file automatically generated from DocOnce source (https://github.com/doconce/doconce/)
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doconce format html exercisesweek36.do.txt --no_mako -->
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<!-- dom:TITLE: Exercises week 36 --><section class="tex2jax_ignore mathjax_ignore" id="exercises-week-36">
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<h1>Exercises week 36<a class="headerlink" href="#exercises-week-36" title="Permalink to this heading">#</a></h1>
|
||
<p><strong>September 4-8, 2023</strong></p>
|
||
<p>Date: <strong>Deadline is Sunday September 10 at midnight</strong></p>
|
||
<section id="overarching-aims-of-the-exercises-this-week">
|
||
<h2>Overarching aims of the exercises this week<a class="headerlink" href="#overarching-aims-of-the-exercises-this-week" title="Permalink to this heading">#</a></h2>
|
||
<p>This set of exercises form an important part of the first project. The
|
||
analytical exercises deal with the material covered last week on the
|
||
mathematical interpretations of ordinary least squares and of Ridge
|
||
regression. The numerical exercises can be seen as a continuation of
|
||
exercise 3 from week 35, with the inclusion of Ridge regression. This
|
||
material enters also the discussions of the first project.</p>
|
||
</section>
|
||
<section id="exercise-1-analytical-exercises">
|
||
<h2>Exercise 1: Analytical exercises<a class="headerlink" href="#exercise-1-analytical-exercises" title="Permalink to this heading">#</a></h2>
|
||
<p>The aim here is to derive the expression for the optimal parameters
|
||
using Ridge regression. Furthermore, using the singular value
|
||
decomposition, we will analyze the difference between the ordinary
|
||
least squares approach and Ridge regression.</p>
|
||
<p>The expression for the standard Mean Squared Error (MSE) which we used to define our cost function and the equations for the ordinary least squares (OLS) method, was given by the
|
||
optimization problem</p>
|
||
<div class="math notranslate nohighlight">
|
||
\[
|
||
{\displaystyle \min_{\boldsymbol{\beta}\in {\mathbb{R}}^{p}}}\frac{1}{n}\left\{\left(\boldsymbol{y}-\boldsymbol{X}\boldsymbol{\beta}\right)^T\left(\boldsymbol{y}-\boldsymbol{X}\boldsymbol{\beta}\right)\right\}.
|
||
\]</div>
|
||
<p>which we can also write as</p>
|
||
<div class="math notranslate nohighlight">
|
||
\[
|
||
{\displaystyle \min_{\boldsymbol{\beta}\in
|
||
{\mathbb{R}}^{p}}}\frac{1}{n}\sum_{i=0}^{n-1}\left(y_i-\tilde{y}_i\right)^2=\frac{1}{n}\vert\vert \boldsymbol{y}-\boldsymbol{X}\boldsymbol{\beta}\vert\vert_2^2,
|
||
\]</div>
|
||
<p>where we have used the definition of a norm-2 vector, that is</p>
|
||
<div class="math notranslate nohighlight">
|
||
\[
|
||
\vert\vert \boldsymbol{x}\vert\vert_2 = \sqrt{\sum_i x_i^2}.
|
||
\]</div>
|
||
<p>By minimizing the above equation with respect to the parameters
|
||
<span class="math notranslate nohighlight">\(\boldsymbol{\beta}\)</span> we could then obtain an analytical expression for the
|
||
parameters <span class="math notranslate nohighlight">\(\boldsymbol{\beta}\)</span>.</p>
|
||
<p>We can add a regularization parameter <span class="math notranslate nohighlight">\(\lambda\)</span> by
|
||
defining a new cost function to be optimized, that is</p>
|
||
<div class="math notranslate nohighlight">
|
||
\[
|
||
{\displaystyle \min_{\boldsymbol{\beta}\in
|
||
{\mathbb{R}}^{p}}}\frac{1}{n}\vert\vert \boldsymbol{y}-\boldsymbol{X}\boldsymbol{\beta}\vert\vert_2^2+\lambda\vert\vert \boldsymbol{\beta}\vert\vert_2^2
|
||
\]</div>
|
||
<p>which leads to the Ridge regression minimization problem. One can require as part of the optimization problem
|
||
that <span class="math notranslate nohighlight">\(\vert\vert \boldsymbol{\beta}\vert\vert_2^2\le t\)</span>, where <span class="math notranslate nohighlight">\(t\)</span> is
|
||
a finite number larger than zero. We will not implement that here.</p>
|
||
<section id="a-expression-for-ridge-regression">
|
||
<h3>a) Expression for Ridge regression<a class="headerlink" href="#a-expression-for-ridge-regression" title="Permalink to this heading">#</a></h3>
|
||
<p>Show that the optimal parameters</p>
|
||
<div class="math notranslate nohighlight">
|
||
\[
|
||
\hat{\boldsymbol{\beta}}_{\mathrm{Ridge}} = \left(\boldsymbol{X}^T\boldsymbol{X}+\lambda\boldsymbol{I}\right)^{-1}\boldsymbol{X}^T\boldsymbol{y},
|
||
\]</div>
|
||
<p>with <span class="math notranslate nohighlight">\(\boldsymbol{I}\)</span> being a <span class="math notranslate nohighlight">\(p\times p\)</span> identity matrix with the constraint that</p>
|
||
<div class="math notranslate nohighlight">
|
||
\[
|
||
\sum_{i=0}^{p-1} \beta_i^2 \leq t,
|
||
\]</div>
|
||
<p>with <span class="math notranslate nohighlight">\(t\)</span> a finite positive number. In the optimization, we will not require that the latter is satisfied.</p>
|
||
<p>The ordinary least squares result is</p>
|
||
<div class="math notranslate nohighlight">
|
||
\[
|
||
\hat{\boldsymbol{\beta}}_{\mathrm{OLS}} = \left(\boldsymbol{X}^T\boldsymbol{X}\right)^{-1}\boldsymbol{X}^T\boldsymbol{y},
|
||
\]</div>
|
||
</section>
|
||
<section id="b-the-singular-value-decomposition">
|
||
<h3>b) The singular value decomposition<a class="headerlink" href="#b-the-singular-value-decomposition" title="Permalink to this heading">#</a></h3>
|
||
<p>Here we will use the singular value decomposition of an <span class="math notranslate nohighlight">\(n\times p\)</span> matrix <span class="math notranslate nohighlight">\(\boldsymbol{X}\)</span> (our design matrix)</p>
|
||
<div class="math notranslate nohighlight">
|
||
\[
|
||
\boldsymbol{X}=\boldsymbol{U}\boldsymbol{\Sigma}\boldsymbol{V}^T,
|
||
\]</div>
|
||
<p>to study properties of Ridge regression and ordinary least squares regression.
|
||
Here <span class="math notranslate nohighlight">\(\boldsymbol{U}\)</span> and <span class="math notranslate nohighlight">\(\boldsymbol{V}\)</span> are orthogonal matrices of dimensions
|
||
<span class="math notranslate nohighlight">\(n\times n\)</span> and <span class="math notranslate nohighlight">\(p\times p\)</span>, respectively, and <span class="math notranslate nohighlight">\(\boldsymbol{\Sigma}\)</span> is an
|
||
<span class="math notranslate nohighlight">\(n\times p\)</span> matrix which contains the singular values only. This material was discussed during the lectures of week 35.</p>
|
||
<p>Show that you can write the
|
||
OLS solutions in terms of the eigenvectors (the columns) of the orthogonal matrix <span class="math notranslate nohighlight">\(\boldsymbol{U}\)</span> as</p>
|
||
<div class="math notranslate nohighlight">
|
||
\[
|
||
\tilde{\boldsymbol{y}}_{\mathrm{OLS}}=\boldsymbol{X}\boldsymbol{\beta} = \sum_{j=0}^{p-1}\boldsymbol{u}_j\boldsymbol{u}_j^T\boldsymbol{y}.
|
||
\]</div>
|
||
<p>For Ridge regression, show that the corresponding equation is</p>
|
||
<div class="math notranslate nohighlight">
|
||
\[
|
||
\tilde{\boldsymbol{y}}_{\mathrm{Ridge}}=\boldsymbol{X}\boldsymbol{\beta}_{\mathrm{Ridge}} = \boldsymbol{U\Sigma V^T}\left(\boldsymbol{V}\boldsymbol{\Sigma}^2\boldsymbol{V}^T+\lambda\boldsymbol{I} \right)^{-1}(\boldsymbol{U\Sigma V^T})^T\boldsymbol{y}=\sum_{j=0}^{p-1}\boldsymbol{u}_j\boldsymbol{u}_j^T\frac{\sigma_j^2}{\sigma_j^2+\lambda}\boldsymbol{y},
|
||
\]</div>
|
||
<p>with the vectors <span class="math notranslate nohighlight">\(\boldsymbol{u}_j\)</span> being the columns of <span class="math notranslate nohighlight">\(\boldsymbol{U}\)</span> from the SVD of the matrix <span class="math notranslate nohighlight">\(\boldsymbol{X}\)</span>.</p>
|
||
<p>Give an interpretation of the results. <a class="reference external" href="https://link.springer.com/book/10.1007/978-0-387-84858-7">Section 3.4 of Hastie et al’s textbook gives a good discussion of the above results</a>.</p>
|
||
</section>
|
||
</section>
|
||
<section id="exercise-2-adding-ridge-regression">
|
||
<h2>Exercise 2: Adding Ridge Regression<a class="headerlink" href="#exercise-2-adding-ridge-regression" title="Permalink to this heading">#</a></h2>
|
||
<p>This exercise is a continuation of exercise 3 from week 35, see <a class="reference external" href="https://compphysics.github.io/MachineLearning/doc/LectureNotes/_build/html/exercisesweek35.html">https://compphysics.github.io/MachineLearning/doc/LectureNotes/_build/html/exercisesweek35.html</a>. We will use the same function to
|
||
generate our data set, still staying with a simple function <span class="math notranslate nohighlight">\(y(x)\)</span>
|
||
which we want to fit using linear regression, but now extending the
|
||
analysis to include the Ridge regression method.</p>
|
||
<p>In this exercise you need to include the same elements from last week, that is</p>
|
||
<ol class="arabic simple">
|
||
<li><p>scale your data by subtracting the mean value from each column in the design matrix.</p></li>
|
||
<li><p>perform a split of the data in a training set and a test set.</p></li>
|
||
</ol>
|
||
<p>The addition to the analysis this time is the introduction of the hyperparameter <span class="math notranslate nohighlight">\(\lambda\)</span> when introducing Ridge regression.</p>
|
||
<p>Extend the code from exercise 3 from <a class="reference external" href="https://compphysics.github.io/MachineLearning/doc/LectureNotes/_build/html/exercisesweek35.html">week 35</a> to include Ridge regression with the hyperparameter <span class="math notranslate nohighlight">\(\lambda\)</span>. The optimal parameters <span class="math notranslate nohighlight">\(\hat{\beta}\)</span> for Ridge regression can be obtained by matrix inversion in a similar way as done for ordinary least squares. You need to add to your code the following equations</p>
|
||
<div class="math notranslate nohighlight">
|
||
\[
|
||
\hat{\boldsymbol{\beta}}_{\mathrm{Ridge}} = \left(\boldsymbol{X}^T\boldsymbol{X}+\lambda\boldsymbol{I}\right)^{-1}\boldsymbol{X}^T\boldsymbol{y}.
|
||
\]</div>
|
||
<p>The ordinary least squares result you encoded last week is given by</p>
|
||
<div class="math notranslate nohighlight">
|
||
\[
|
||
\hat{\boldsymbol{\beta}}_{\mathrm{OLS}} = \left(\boldsymbol{X}^T\boldsymbol{X}\right)^{-1}\boldsymbol{X}^T\boldsymbol{y},
|
||
\]</div>
|
||
<p>Use these results to compute the mean squared error for ordinary least
|
||
squares and Ridge regression first for a polynomial of degree five
|
||
with <span class="math notranslate nohighlight">\(n=100\)</span> data points and five selected values of
|
||
<span class="math notranslate nohighlight">\(\lambda=[0.0001,0.001, 0.01,0.1,1.0]\)</span>. Compute thereafter the mean
|
||
squared error for the same values of <span class="math notranslate nohighlight">\(\lambda\)</span> for polynomials of degree ten
|
||
and <span class="math notranslate nohighlight">\(15\)</span>. Discuss your results for the training MSE and test MSE with
|
||
Ridge regression and ordinary least squares.</p>
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</section>
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</section>
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<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#overarching-aims-of-the-exercises-this-week">Overarching aims of the exercises this week</a></li>
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<li class="toc-h3 nav-item toc-entry"><a class="reference internal nav-link" href="#a-expression-for-ridge-regression">a) Expression for Ridge regression</a></li>
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<li class="toc-h3 nav-item toc-entry"><a class="reference internal nav-link" href="#b-the-singular-value-decomposition">b) The singular value decomposition</a></li>
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<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#exercise-2-adding-ridge-regression">Exercise 2: Adding Ridge Regression</a></li>
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