Welcome to FYS-STK3155/4155!
In this first week will focus on getting you set up with the programs you are going to be using throughout this course. We expect that many of you will encounter some trouble with setting these programs up, as they can be extremely finnicky and prone to not working the same on all machines, so we strongly encourage you to not get discouraged, and to show up to the group-sessions where we can help you along. The group sessions are also the best place to find group partners for the projects and to be challenged on your understanding of the material, which are both essential to doing well in this course. We strongly encourage you to form groups of 2-3 participants.
-If you are unable to complete this weekss exercises, don’t worry, this will likely be the most frustrating week for many of you. You have time to get back on track next week, especially if you come to the group-sessions! Note also that this week’s set of exercises does not count for the additional score. The deadline for the weekly exercises is set to Fridays, at midnight.
+If you are unable to complete this week’s exercises, don’t worry, this will likely be the most frustrating week for many of you. You have time to get back on track next week, especially if you come to the group-sessions! Note also that this week’s set of exercises does not count for the additional score. The deadline for the weekly exercises is set to Fridays, at midnight.
After completing these exercises, you will know how to
diff --git a/doc/LectureNotes/_build/html/_sources/E1.ipynb b/doc/LectureNotes/_build/html/_sources/E1.ipynb index 1fa343a6e..5a9b9a23b 100644 --- a/doc/LectureNotes/_build/html/_sources/E1.ipynb +++ b/doc/LectureNotes/_build/html/_sources/E1.ipynb @@ -19,7 +19,7 @@ "\n", "In this first week will focus on getting you set up with the programs you are going to be using throughout this course. We expect that many of you will encounter some trouble with setting these programs up, as they can be extremely finnicky and prone to not working the same on all machines, so we strongly encourage you to not get discouraged, and to show up to the group-sessions where we can help you along. The group sessions are also the best place to find group partners for the projects and to be challenged on your understanding of the material, which are both essential to doing well in this course. We strongly encourage you to form groups of 2-3 participants. \n", "\n", - "If you are unable to complete this weekss exercises, don't worry, this will likely be the most frustrating week for many of you. You have time to get back on track next week, especially if you come to the group-sessions! Note also that this week's set of exercises does not count for the additional score. The deadline for the weekly exercises is set to Fridays, at midnight." + "If you are unable to complete this week's exercises, don't worry, this will likely be the most frustrating week for many of you. You have time to get back on track next week, especially if you come to the group-sessions! Note also that this week's set of exercises does not count for the additional score. The deadline for the weekly exercises is set to Fridays, at midnight." ] }, { diff --git a/doc/LectureNotes/_build/html/genindex.html b/doc/LectureNotes/_build/html/genindex.html index 905369861..907e860ee 100644 --- a/doc/LectureNotes/_build/html/genindex.html +++ b/doc/LectureNotes/_build/html/genindex.html @@ -31,7 +31,7 @@ - + diff --git a/doc/LectureNotes/_build/html/intro.html b/doc/LectureNotes/_build/html/intro.html index 179fca5f2..19dc216b0 100644 --- a/doc/LectureNotes/_build/html/intro.html +++ b/doc/LectureNotes/_build/html/intro.html @@ -32,7 +32,7 @@ - + diff --git a/doc/LectureNotes/_build/html/search.html b/doc/LectureNotes/_build/html/search.html index 506889057..31483789c 100644 --- a/doc/LectureNotes/_build/html/search.html +++ b/doc/LectureNotes/_build/html/search.html @@ -30,7 +30,7 @@ - + diff --git a/doc/LectureNotes/_build/html/searchindex.js b/doc/LectureNotes/_build/html/searchindex.js index cb504759c..6e819f059 100644 --- a/doc/LectureNotes/_build/html/searchindex.js +++ b/doc/LectureNotes/_build/html/searchindex.js @@ -1 +1 @@ -Search.setIndex({"alltitles": {"A Classification Tree": [[11, "a-classification-tree"]], "A Frequentist approach to data analysis": [[2, "a-frequentist-approach-to-data-analysis"], [23, "a-frequentist-approach-to-data-analysis"]], "A better approach": [[10, "a-better-approach"]], "A first summary": [[23, "a-first-summary"]], "A quick Reminder on Lagrangian Multipliers": [[10, "a-quick-reminder-on-lagrangian-multipliers"]], "A simple example": [[6, "a-simple-example"]], "A soft classifier": [[10, "a-soft-classifier"]], "A top-down perspective on Neural networks": [[3, "a-top-down-perspective-on-neural-networks"]], "ADAM optimizer": [[15, "adam-optimizer"]], "Activation functions": [[14, "activation-functions"]], "Adaptive boosting: AdaBoost, Basic Algorithm": [[12, "adaptive-boosting-adaboost-basic-algorithm"]], "Adding error analysis and training set up": [[23, "adding-error-analysis-and-training-set-up"]], "Adjust hyperparameters": [[3, "adjust-hyperparameters"]], "Algorithms for Setting up Decision Trees": [[11, "algorithms-for-setting-up-decision-trees"]], "An Overview of Ensemble Methods": [[12, "an-overview-of-ensemble-methods"]], "An extrapolation example": [[6, "an-extrapolation-example"]], "An optimization/minimization problem": [[23, "an-optimization-minimization-problem"]], "And what about using neural networks?": [[23, "and-what-about-using-neural-networks"]], "Another example, the moons again": [[11, "another-example-the-moons-again"]], "Applied Data Analysis and Machine Learning": [[17, null]], "Autocorrelation function": [[20, "autocorrelation-function"]], "Automatic differentiation": [[15, "automatic-differentiation"]], "Back to the Cancer Data": [[13, "back-to-the-cancer-data"]], "Bagging": [[12, "bagging"]], "Bagging Examples": [[12, "bagging-examples"]], "Basic Matrix Features": [[18, "basic-matrix-features"]], "Basic ideas of the Principal Component Analysis (PCA)": [[13, null]], "Basic math of the SVD": [[7, "basic-math-of-the-svd"]], "Basics": [[9, "basics"]], "Basics of a tree": [[11, "basics-of-a-tree"]], "Batch Normalization": [[3, "batch-normalization"]], "Bayes\u2019 Theorem and Ridge and Lasso Regression": [[7, "bayes-theorem-and-ridge-and-lasso-regression"]], "Boosting, a Bird\u2019s Eye View": [[12, "boosting-a-bird-s-eye-view"]], "Bootstrap": [[8, "bootstrap"]], "Bringing it together, first back propagation equation": [[14, "bringing-it-together-first-back-propagation-equation"]], "Building a Feed Forward Neural Network": [[3, null]], "Building a tree, regression": [[11, "building-a-tree-regression"]], "Building neural networks in Tensorflow and Keras": [[3, "building-neural-networks-in-tensorflow-and-keras"]], "CNNs in more detail, building convolutional neural networks in Tensorflow and Keras": [[5, "cnns-in-more-detail-building-convolutional-neural-networks-in-tensorflow-and-keras"]], "Cancer Data again now with Decision Trees and other Methods": [[11, "cancer-data-again-now-with-decision-trees-and-other-methods"]], "Choose cost function and optimizer": [[3, "choose-cost-function-and-optimizer"]], "Classical PCA Theorem": [[13, "classical-pca-theorem"]], "Clustering and Unsupervised Learning": [[16, null]], "Code for SVD and Inversion of Matrices": [[7, "code-for-svd-and-inversion-of-matrices"]], "Codes and Approaches": [[16, "codes-and-approaches"]], "Codes for the SVD": [[7, "codes-for-the-svd"]], "Coding Setup and Linear Regression": [[0, "coding-setup-and-linear-regression"]], "Collect and pre-process data": [[3, "collect-and-pre-process-data"]], "Communication channels": [[23, "communication-channels"]], "Compare Bagging on Trees with Random Forests": [[12, "compare-bagging-on-trees-with-random-forests"]], "Comparing with a numerical scheme": [[4, "comparing-with-a-numerical-scheme"]], "Computing the Gini index": [[11, "computing-the-gini-index"]], "Conjugate gradient method": [[15, "conjugate-gradient-method"]], "Convex functions": [[15, "convex-functions"]], "Convolution Examples: Polynomial multiplication": [[5, "convolution-examples-polynomial-multiplication"]], "Convolution Examples: Principle of Superposition and Periodic Forces (Fourier Transforms)": [[5, "convolution-examples-principle-of-superposition-and-periodic-forces-fourier-transforms"]], "Convolutional Neural Network": [[14, "convolutional-neural-network"]], "Convolutional Neural Networks": [[5, null]], "Correlation Matrix": [[13, "correlation-matrix"]], "Course Format": [[23, "course-format"]], "Course setting": [[19, null]], "Cross-validation": [[8, "cross-validation"]], "Deadlines for projects (tentative)": [[23, "deadlines-for-projects-tentative"]], "Decision trees, overarching aims": [[11, null]], "Deep learning methods": [[23, "deep-learning-methods"]], "Define model and architecture": [[3, "define-model-and-architecture"]], "Defining the cost function": [[3, "defining-the-cost-function"]], "Deliverables": [[0, "deliverables"], [1, "deliverables"]], "Derivatives and the chain rule": [[14, "derivatives-and-the-chain-rule"]], "Deriving OLS from a probability distribution": [[7, "deriving-ols-from-a-probability-distribution"]], "Deriving and Implementing Ordinary Least Squares": [[1, "deriving-and-implementing-ordinary-least-squares"]], "Deriving the back propagation code for a multilayer perceptron model": [[14, "deriving-the-back-propagation-code-for-a-multilayer-perceptron-model"]], "Developing a code for doing neural networks with back propagation": [[3, "developing-a-code-for-doing-neural-networks-with-back-propagation"]], "Diagonalize the sample covariance matrix to obtain the principal components": [[13, "diagonalize-the-sample-covariance-matrix-to-obtain-the-principal-components"]], "Different kernels and Mercer\u2019s theorem": [[10, "different-kernels-and-mercer-s-theorem"]], "Disadvantages": [[11, "disadvantages"]], "Discriminative Modeling": [[23, "discriminative-modeling"]], "Domains and probabilities": [[20, "domains-and-probabilities"]], "Dropout": [[3, "dropout"]], "Elements of Probability Theory and Statistical Data Analysis": [[20, null]], "Ensemble Methods: From a Single Tree to Many Trees and Extreme Boosting, Meet the Jungle of Methods": [[12, null]], "Entropy and the ID3 algorithm": [[11, "entropy-and-the-id3-algorithm"]], "Essential elements of ML": [[23, "essential-elements-of-ml"]], "Evaluate model performance on test data": [[3, "evaluate-model-performance-on-test-data"]], "Example of discriminative modeling, taken from Generative Deeep Learning by David Foster": [[23, "example-of-discriminative-modeling-taken-from-generative-deeep-learning-by-david-foster"]], "Example of generative modeling, taken from Generative Deep Learning by David Foster": [[23, "example-of-generative-modeling-taken-from-generative-deep-learning-by-david-foster"]], "Example: Exponential decay": [[4, 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making your own data and exploring scikit-learn": [[2, "exercise-2-making-your-own-data-and-exploring-scikit-learn"]], "Exercise 3 - Creating feature matrix and implementing OLS using the analytical expression": [[1, "exercise-3-creating-feature-matrix-and-implementing-ols-using-the-analytical-expression"]], "Exercise 3 - Fitting an OLS model to data": [[0, "exercise-3-fitting-an-ols-model-to-data"]], "Exercise 3 - Setting up a Python virtual environment": [[0, "exercise-3-setting-up-a-python-virtual-environment"]], "Exercise 3: Normalizing our data": [[2, "exercise-3-normalizing-our-data"]], "Exercise 4 - Fitting a polynomial": [[1, "exercise-4-fitting-a-polynomial"]], "Exercise 4 - The train-test split": [[0, "exercise-4-the-train-test-split"]], "Exercise 4: Adding Ridge Regression": [[2, "exercise-4-adding-ridge-regression"]], "Exercise 5 - Comparing your code with sklearn": [[1, "exercise-5-comparing-your-code-with-sklearn"]], "Exercise 5: Analytical exercises": [[2, "exercise-5-analytical-exercises"]], "Exercise: Cross-validation as resampling techniques, adding more complexity": [[8, "exercise-cross-validation-as-resampling-techniques-adding-more-complexity"]], "Exercise: Analysis of real data": [[8, "exercise-analysis-of-real-data"]], "Exercise: Bias-variance trade-off and resampling techniques": [[8, "exercise-bias-variance-trade-off-and-resampling-techniques"]], "Exercise: Lasso Regression on the Franke function with resampling": [[8, "exercise-lasso-regression-on-the-franke-function-with-resampling"]], "Exercise: Ordinary Least Square (OLS) on the Franke function": [[8, "exercise-ordinary-least-square-ols-on-the-franke-function"]], "Exercise: Ridge Regression on the Franke function with resampling": [[8, "exercise-ridge-regression-on-the-franke-function-with-resampling"]], "Exercises": [[2, "exercises"]], "Exercises and Projects": [[8, "exercises-and-projects"]], "Exercises week 34": [[0, null]], "Exercises week 35": [[1, null]], "Expectation values": [[20, "expectation-values"]], "Extremely useful tools, strongly recommended": [[23, "extremely-useful-tools-strongly-recommended"]], "Feed-forward neural networks": [[14, "feed-forward-neural-networks"]], "Feed-forward pass": [[3, "feed-forward-pass"]], "Final back propagating equation": [[14, "final-back-propagating-equation"]], "Fine-tuning neural network hyperparameters": [[3, "fine-tuning-neural-network-hyperparameters"]], "Fitting an Equation of State for Dense Nuclear Matter": [[2, "fitting-an-equation-of-state-for-dense-nuclear-matter"]], "From one to many layers, the universal approximation theorem": [[14, "from-one-to-many-layers-the-universal-approximation-theorem"]], "Further Dimensionality Remarks": [[5, "further-dimensionality-remarks"]], "Further properties (important for our analyses later)": [[7, "further-properties-important-for-our-analyses-later"]], "Gaussian Elimination": [[18, "gaussian-elimination"]], "General Features": [[11, "general-features"]], "General linear models and linear algebra": [[23, "general-linear-models-and-linear-algebra"]], "Generalizing the fitting procedure as a linear algebra problem": [[23, "generalizing-the-fitting-procedure-as-a-linear-algebra-problem"], [23, "id1"]], "Generative Adversarial Networks": [[6, "generative-adversarial-networks"]], "Generative Models": [[6, "generative-models"]], "Generative Versus Discriminative Modeling": [[23, "generative-versus-discriminative-modeling"]], "Geometric Interpretation and link with Singular Value Decomposition": [[13, "geometric-interpretation-and-link-with-singular-value-decomposition"]], "Gradient Boosting, Classification Example": [[12, "gradient-boosting-classification-example"]], "Gradient Boosting, Examples of Regression": [[12, "gradient-boosting-examples-of-regression"]], "Gradient Clipping": [[3, "gradient-clipping"]], "Gradient boosting: Basics with Steepest Descent/Functional Gradient Descent": [[12, "gradient-boosting-basics-with-steepest-descent-functional-gradient-descent"]], "Gradient descent": [[4, "gradient-descent"]], "Grading": [[21, "grading"], [21, "id2"], [23, "grading"]], "Housing data, the code": [[2, "housing-data-the-code"]], "How to take derivatives of Matrix-Vector expressions": [[1, "how-to-take-derivatives-of-matrix-vector-expressions"]], "Hyperplanes and all that": [[10, "hyperplanes-and-all-that"]], "Important Matrix and vector handling packages": [[18, "important-matrix-and-vector-handling-packages"]], "Improving performance": [[3, "improving-performance"]], "In summary": [[21, "in-summary"]], "Including Stochastic Gradient Descent with Autograd": [[15, "including-stochastic-gradient-descent-with-autograd"]], "Incremental PCA": [[13, "incremental-pca"]], "Installing R, C++, cython or Julia": [[23, "installing-r-c-cython-or-julia"]], "Installing R, C++, cython, Numba etc": [[23, "installing-r-c-cython-numba-etc"]], "Instructor information": [[21, "instructor-information"]], "Interpretations and optimizing our parameters": [[23, "interpretations-and-optimizing-our-parameters"], [23, "id2"], [23, "id3"]], "Introducing JAX": [[15, "introducing-jax"]], "Introducing the Covariance and Correlation functions": [[13, "introducing-the-covariance-and-correlation-functions"]], "Introduction": [[2, "introduction"], [8, "introduction"], [17, "introduction"], [18, "introduction"]], "Iterative Fitting, Classification and AdaBoost": [[12, "iterative-fitting-classification-and-adaboost"]], "Iterative Fitting, Regression and Squared-error Cost Function": [[12, "iterative-fitting-regression-and-squared-error-cost-function"]], "Kernel PCA": [[13, "kernel-pca"]], "Kernels and non-linearity": [[10, "kernels-and-non-linearity"]], "LU Decomposition, the inverse of a matrix": [[18, "lu-decomposition-the-inverse-of-a-matrix"]], "Layers": [[3, "layers"]], "Layers used to build CNNs": [[5, "layers-used-to-build-cnns"]], "Learning goals": [[0, "learning-goals"], [1, "learning-goals"]], "Learning outcomes": [[17, "learning-outcomes"], [23, "learning-outcomes"]], "Lectures and ComputerLab": [[23, "lectures-and-computerlab"]], "Limitations of supervised learning with deep networks": [[3, "limitations-of-supervised-learning-with-deep-networks"]], "Linear Algebra, Handling of Arrays and more Python Features": [[18, null]], "Linear Regression": [[2, null]], "Linear Regression, basic elements": [[2, "linear-regression-basic-elements"]], "Linking Bayes\u2019 Theorem with Ridge and Lasso Regression": [[7, "linking-bayes-theorem-with-ridge-and-lasso-regression"]], "Linking the regression analysis with a statistical interpretation": [[7, "linking-the-regression-analysis-with-a-statistical-interpretation"]], "Linking with the SVD": [[7, "linking-with-the-svd"]], "Links to relevant courses at the University of Oslo": [[22, "links-to-relevant-courses-at-the-university-of-oslo"]], "Logistic Regression": [[9, null], [9, "id1"]], "MNIST and GANs": [[6, "mnist-and-gans"]], "Machine Learning": [[23, "machine-learning"]], "Machine learning": [[17, "machine-learning"]], "Main textbooks": [[23, "main-textbooks"]], "Making a tree": [[11, "making-a-tree"]], "Making your own Bootstrap: Changing the Level of the Decision Tree": [[12, "making-your-own-bootstrap-changing-the-level-of-the-decision-tree"]], "Mathematical Interpretation of Ordinary Least Squares": [[7, "mathematical-interpretation-of-ordinary-least-squares"]], "Mathematical optimization of convex functions": [[10, "mathematical-optimization-of-convex-functions"]], "Mathematics of CNNs": [[5, "mathematics-of-cnns"]], "Mathematics of the SVD and implications": [[7, "mathematics-of-the-svd-and-implications"]], "Matrices in Python": [[23, "matrices-in-python"]], "Matrix multiplication": [[3, "matrix-multiplication"]], "Matrix-vector notation and activation": [[14, "matrix-vector-notation-and-activation"]], "Meet the covariance!": [[20, "meet-the-covariance"]], "Meet the Covariance Matrix": [[7, "meet-the-covariance-matrix"]], "Meet the Pandas": [[23, "meet-the-pandas"]], "Momentum based GD": [[15, "momentum-based-gd"]], "More complicated Example: The Ising model": [[8, "more-complicated-example-the-ising-model"]], "More on Dimensionalities": [[5, "more-on-dimensionalities"]], "More on Rescaling data": [[8, "more-on-rescaling-data"]], "Multilayer perceptrons": [[14, "multilayer-perceptrons"]], "Network requirements": [[4, "network-requirements"]], "Neural Networks vs CNNs": [[5, "neural-networks-vs-cnns"]], "Neural networks": [[14, null]], "Numerical experiments and the covariance, central limit theorem": [[20, "numerical-experiments-and-the-covariance-central-limit-theorem"]], "Numpy and arrays": [[18, "numpy-and-arrays"], [23, "numpy-and-arrays"]], "Numpy examples and Important Matrix and vector handling packages": [[23, "numpy-examples-and-important-matrix-and-vector-handling-packages"]], "Optimization, the central part of any Machine Learning algortithm": [[15, null]], "Optimizing our parameters": [[23, "optimizing-our-parameters"]], "Optimizing our parameters, more details": [[23, "optimizing-our-parameters-more-details"]], "Optimizing the cost function": [[3, "optimizing-the-cost-function"]], "Organizing our data": [[2, "organizing-our-data"], [23, "organizing-our-data"]], "Other Matrix and Vector Operations": [[18, "other-matrix-and-vector-operations"]], "Other Types of Recurrent Neural Networks": [[6, "other-types-of-recurrent-neural-networks"]], "Other courses on Data science and Machine Learning at UiO": [[23, "other-courses-on-data-science-and-machine-learning-at-uio"]], "Other courses on Data science and Machine Learning at UiO, contn": [[23, "other-courses-on-data-science-and-machine-learning-at-uio-contn"]], "Other popular texts": [[23, "other-popular-texts"]], "Other techniques": [[13, "other-techniques"]], "Other types of networks": [[14, "other-types-of-networks"]], "Other ways of visualizing the trees": [[11, "other-ways-of-visualizing-the-trees"]], "Our model for the nuclear binding energies": [[23, "our-model-for-the-nuclear-binding-energies"]], "Overview of first week": [[23, "overview-of-first-week"]], "Own code for Ordinary Least Squares": [[23, "own-code-for-ordinary-least-squares"]], "PCA and scikit-learn": [[13, "pca-and-scikit-learn"]], "Pandas AI": [[23, "pandas-ai"]], "Partial Differential Equations": [[4, "partial-differential-equations"]], "Practical tips": [[15, "practical-tips"]], "Practicalities": [[21, "practicalities"], [21, "id1"]], "Predicting New Points With A Trained Recurrent Neural Network": [[6, "predicting-new-points-with-a-trained-recurrent-neural-network"]], "Prerequisites": [[23, "prerequisites"]], "Prerequisites and background": [[17, "prerequisites-and-background"]], "Prerequisites: Collect and pre-process data": [[5, "prerequisites-collect-and-pre-process-data"]], "Probability Distribution Functions": [[20, "probability-distribution-functions"]], "Program for stochastic gradient": [[15, "program-for-stochastic-gradient"]], "Properties of PDFs": [[20, "properties-of-pdfs"]], "Pros and cons of trees, pros": [[11, "pros-and-cons-of-trees-pros"]], "Python installers": [[17, "python-installers"], [23, "python-installers"]], "RMS prop": [[15, "rms-prop"]], "Random Numbers": [[20, "random-numbers"]], "Random forests": [[12, "random-forests"]], "Randomized PCA": [[13, "randomized-pca"]], "Reading material": [[23, "reading-material"]], "Reading suggestions week 34": [[23, "reading-suggestions-week-34"]], "Recurrent neural networks": [[14, "recurrent-neural-networks"]], "Recurrent neural networks: Overarching view": [[6, null]], "Reducing the number of degrees of freedom, overarching view": [[2, "reducing-the-number-of-degrees-of-freedom-overarching-view"]], "Reformulating the problem": [[4, "reformulating-the-problem"]], "Regression Case": [[12, "regression-case"]], "Regression analysis, overarching aims": [[23, "regression-analysis-overarching-aims"]], "Regression analysis, overarching aims II": [[23, "regression-analysis-overarching-aims-ii"]], "Regularization": [[3, "regularization"]], "Reminder on Statistics": [[8, "reminder-on-statistics"]], "Replace or not": [[15, "replace-or-not"]], "Required Technologies": [[17, "required-technologies"]], "Resampling Methods": [[8, null]], "Resampling methods": [[8, "id1"]], "Resources on differential equations and deep learning": [[4, "resources-on-differential-equations-and-deep-learning"]], "Revisiting our Linear Regression Solvers": [[15, "revisiting-our-linear-regression-solvers"]], "Rewriting the fitting procedure as a linear algebra problem": [[23, "rewriting-the-fitting-procedure-as-a-linear-algebra-problem"]], "Rewriting the fitting procedure as a linear algebra problem, more details": [[23, "rewriting-the-fitting-procedure-as-a-linear-algebra-problem-more-details"]], "Ridge and Lasso Regression": [[7, null], [7, "id1"]], "Same code but now 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"wave": 4, "we": 23, "week": [0, 1, 23], "what": [2, 23], "which": 3, "why": 23, "wisconsin": 9, "write": [6, 13], "xgboost": 12, "your": [1, 2, 12]}}) \ No newline at end of file +Search.setIndex({"alltitles": {"A Classification Tree": [[11, "a-classification-tree"]], "A Frequentist approach to data analysis": [[2, "a-frequentist-approach-to-data-analysis"], [23, "a-frequentist-approach-to-data-analysis"]], "A better approach": [[10, "a-better-approach"]], "A first summary": [[23, "a-first-summary"]], "A quick Reminder on Lagrangian Multipliers": [[10, "a-quick-reminder-on-lagrangian-multipliers"]], "A simple example": [[6, "a-simple-example"]], "A soft classifier": [[10, "a-soft-classifier"]], "A top-down perspective on Neural networks": [[3, "a-top-down-perspective-on-neural-networks"]], "ADAM optimizer": [[15, "adam-optimizer"]], "Activation functions": [[14, "activation-functions"]], "Adaptive boosting: AdaBoost, Basic Algorithm": [[12, "adaptive-boosting-adaboost-basic-algorithm"]], "Adding error analysis and training set up": [[23, "adding-error-analysis-and-training-set-up"]], "Adjust hyperparameters": [[3, "adjust-hyperparameters"]], "Algorithms for Setting up Decision Trees": [[11, "algorithms-for-setting-up-decision-trees"]], "An Overview of Ensemble Methods": [[12, "an-overview-of-ensemble-methods"]], "An extrapolation example": [[6, "an-extrapolation-example"]], "An optimization/minimization problem": [[23, "an-optimization-minimization-problem"]], "And what about using neural networks?": [[23, "and-what-about-using-neural-networks"]], "Another example, the moons again": [[11, "another-example-the-moons-again"]], "Applied Data Analysis and Machine Learning": [[17, null]], "Autocorrelation function": [[20, "autocorrelation-function"]], "Automatic differentiation": [[15, "automatic-differentiation"]], "Back to the Cancer Data": [[13, "back-to-the-cancer-data"]], "Bagging": [[12, "bagging"]], "Bagging Examples": [[12, "bagging-examples"]], "Basic Matrix Features": [[18, "basic-matrix-features"]], "Basic ideas of the Principal Component Analysis (PCA)": [[13, null]], "Basic math of the SVD": [[7, "basic-math-of-the-svd"]], "Basics": [[9, "basics"]], "Basics of a tree": [[11, "basics-of-a-tree"]], "Batch Normalization": [[3, "batch-normalization"]], "Bayes\u2019 Theorem and Ridge and Lasso Regression": [[7, "bayes-theorem-and-ridge-and-lasso-regression"]], "Boosting, a Bird\u2019s Eye View": [[12, "boosting-a-bird-s-eye-view"]], "Bootstrap": [[8, "bootstrap"]], "Bringing it together, first back propagation equation": [[14, "bringing-it-together-first-back-propagation-equation"]], "Building a Feed Forward Neural Network": [[3, null]], "Building a tree, regression": [[11, "building-a-tree-regression"]], "Building neural networks in Tensorflow and Keras": [[3, "building-neural-networks-in-tensorflow-and-keras"]], "CNNs in more detail, building convolutional neural networks in Tensorflow and Keras": [[5, "cnns-in-more-detail-building-convolutional-neural-networks-in-tensorflow-and-keras"]], "Cancer Data again now with Decision Trees and other Methods": [[11, "cancer-data-again-now-with-decision-trees-and-other-methods"]], "Choose cost function and optimizer": [[3, "choose-cost-function-and-optimizer"]], "Classical PCA Theorem": [[13, "classical-pca-theorem"]], "Clustering and Unsupervised Learning": [[16, null]], "Code for SVD and Inversion of Matrices": [[7, "code-for-svd-and-inversion-of-matrices"]], "Codes and Approaches": [[16, "codes-and-approaches"]], "Codes for the SVD": [[7, "codes-for-the-svd"]], "Coding Setup and Linear Regression": [[0, "coding-setup-and-linear-regression"]], "Collect and pre-process data": [[3, "collect-and-pre-process-data"]], "Communication channels": [[23, "communication-channels"]], "Compare Bagging on Trees with Random Forests": [[12, "compare-bagging-on-trees-with-random-forests"]], "Comparing with a numerical scheme": [[4, "comparing-with-a-numerical-scheme"]], "Computing the Gini index": [[11, "computing-the-gini-index"]], "Conjugate gradient method": [[15, "conjugate-gradient-method"]], "Convex functions": [[15, "convex-functions"]], "Convolution Examples: Polynomial multiplication": [[5, "convolution-examples-polynomial-multiplication"]], "Convolution Examples: Principle of Superposition and Periodic Forces (Fourier Transforms)": [[5, "convolution-examples-principle-of-superposition-and-periodic-forces-fourier-transforms"]], "Convolutional Neural Network": [[14, "convolutional-neural-network"]], "Convolutional Neural Networks": [[5, null]], "Correlation Matrix": [[13, "correlation-matrix"]], "Course Format": [[23, "course-format"]], "Course setting": [[19, null]], "Cross-validation": [[8, "cross-validation"]], "Deadlines for projects (tentative)": [[23, "deadlines-for-projects-tentative"]], "Decision trees, overarching aims": [[11, null]], "Deep learning methods": [[23, "deep-learning-methods"]], "Define model and architecture": [[3, "define-model-and-architecture"]], "Defining the cost function": [[3, "defining-the-cost-function"]], "Deliverables": [[0, "deliverables"], [1, "deliverables"]], "Derivatives and the chain rule": [[14, "derivatives-and-the-chain-rule"]], "Deriving OLS from a probability distribution": [[7, "deriving-ols-from-a-probability-distribution"]], "Deriving and Implementing Ordinary Least Squares": [[1, "deriving-and-implementing-ordinary-least-squares"]], "Deriving the back propagation code for a multilayer perceptron model": [[14, "deriving-the-back-propagation-code-for-a-multilayer-perceptron-model"]], "Developing a code for doing neural networks with back propagation": [[3, "developing-a-code-for-doing-neural-networks-with-back-propagation"]], "Diagonalize the sample covariance matrix to obtain the principal components": [[13, "diagonalize-the-sample-covariance-matrix-to-obtain-the-principal-components"]], "Different kernels and Mercer\u2019s theorem": [[10, "different-kernels-and-mercer-s-theorem"]], "Disadvantages": [[11, "disadvantages"]], "Discriminative Modeling": [[23, "discriminative-modeling"]], "Domains and probabilities": [[20, "domains-and-probabilities"]], "Dropout": [[3, "dropout"]], "Elements of Probability Theory and Statistical Data Analysis": [[20, null]], "Ensemble Methods: From a Single Tree to Many Trees and Extreme Boosting, Meet the Jungle of Methods": [[12, null]], "Entropy and the ID3 algorithm": [[11, "entropy-and-the-id3-algorithm"]], "Essential elements of ML": [[23, "essential-elements-of-ml"]], "Evaluate model performance on test data": [[3, "evaluate-model-performance-on-test-data"]], "Example of discriminative modeling, taken from Generative Deeep Learning by David Foster": [[23, "example-of-discriminative-modeling-taken-from-generative-deeep-learning-by-david-foster"]], "Example of generative modeling, taken from Generative Deep Learning by David Foster": [[23, "example-of-generative-modeling-taken-from-generative-deep-learning-by-david-foster"]], "Example: Exponential decay": [[4, "example-exponential-decay"]], "Example: Population growth": [[4, "example-population-growth"]], "Example: The diffusion equation": [[4, "example-the-diffusion-equation"]], "Example: binary classification problem": [[3, "example-binary-classification-problem"]], "Examples": [[23, "examples"]], "Examples of likelihood functions used in logistic regression and neural networks": [[9, "examples-of-likelihood-functions-used-in-logistic-regression-and-neural-networks"]], "Exercise 1 - Finding the derivative of Matrix-Vector expressions": [[1, "exercise-1-finding-the-derivative-of-matrix-vector-expressions"]], "Exercise 1 - Github Setup": [[0, "exercise-1-github-setup"]], "Exercise 1: Setting up various Python environments": [[2, "exercise-1-setting-up-various-python-environments"]], "Exercise 2 - Deriving the expression for OLS": [[1, "exercise-2-deriving-the-expression-for-ols"]], "Exercise 2 - Setting up a Github repository": [[0, "exercise-2-setting-up-a-github-repository"]], "Exercise 2: making your own data and exploring scikit-learn": [[2, "exercise-2-making-your-own-data-and-exploring-scikit-learn"]], "Exercise 3 - Creating feature matrix and implementing OLS using the analytical expression": [[1, "exercise-3-creating-feature-matrix-and-implementing-ols-using-the-analytical-expression"]], "Exercise 3 - Fitting an OLS model to data": [[0, "exercise-3-fitting-an-ols-model-to-data"]], "Exercise 3 - Setting up a Python virtual environment": [[0, "exercise-3-setting-up-a-python-virtual-environment"]], "Exercise 3: Normalizing our data": [[2, "exercise-3-normalizing-our-data"]], "Exercise 4 - Fitting a polynomial": [[1, "exercise-4-fitting-a-polynomial"]], "Exercise 4 - The train-test split": [[0, "exercise-4-the-train-test-split"]], "Exercise 4: Adding Ridge Regression": [[2, "exercise-4-adding-ridge-regression"]], "Exercise 5 - Comparing your code with sklearn": [[1, "exercise-5-comparing-your-code-with-sklearn"]], "Exercise 5: Analytical exercises": [[2, "exercise-5-analytical-exercises"]], "Exercise: Cross-validation as resampling techniques, adding more complexity": [[8, "exercise-cross-validation-as-resampling-techniques-adding-more-complexity"]], "Exercise: Analysis of real data": [[8, "exercise-analysis-of-real-data"]], "Exercise: Bias-variance trade-off and resampling techniques": [[8, "exercise-bias-variance-trade-off-and-resampling-techniques"]], "Exercise: Lasso Regression on the Franke function with resampling": [[8, "exercise-lasso-regression-on-the-franke-function-with-resampling"]], "Exercise: Ordinary Least Square (OLS) on the Franke function": [[8, "exercise-ordinary-least-square-ols-on-the-franke-function"]], "Exercise: Ridge Regression on the Franke function with resampling": [[8, "exercise-ridge-regression-on-the-franke-function-with-resampling"]], "Exercises": [[2, "exercises"]], "Exercises and Projects": [[8, "exercises-and-projects"]], "Exercises week 34": [[0, null]], "Exercises week 35": [[1, null]], "Expectation values": [[20, "expectation-values"]], "Extremely useful tools, strongly recommended": [[23, "extremely-useful-tools-strongly-recommended"]], "Feed-forward neural networks": [[14, "feed-forward-neural-networks"]], "Feed-forward pass": [[3, "feed-forward-pass"]], "Final back propagating equation": [[14, "final-back-propagating-equation"]], "Fine-tuning neural network hyperparameters": [[3, "fine-tuning-neural-network-hyperparameters"]], "Fitting an Equation of State for Dense Nuclear Matter": [[2, "fitting-an-equation-of-state-for-dense-nuclear-matter"]], "From one to many layers, the universal approximation theorem": [[14, "from-one-to-many-layers-the-universal-approximation-theorem"]], "Further Dimensionality Remarks": [[5, "further-dimensionality-remarks"]], "Further properties (important for our analyses later)": [[7, "further-properties-important-for-our-analyses-later"]], "Gaussian Elimination": [[18, "gaussian-elimination"]], "General Features": [[11, "general-features"]], "General linear models and linear algebra": [[23, "general-linear-models-and-linear-algebra"]], "Generalizing the fitting procedure as a linear algebra problem": [[23, "generalizing-the-fitting-procedure-as-a-linear-algebra-problem"], [23, "id1"]], "Generative Adversarial Networks": [[6, "generative-adversarial-networks"]], "Generative Models": [[6, "generative-models"]], "Generative Versus Discriminative Modeling": [[23, "generative-versus-discriminative-modeling"]], "Geometric Interpretation and link with Singular Value Decomposition": [[13, "geometric-interpretation-and-link-with-singular-value-decomposition"]], "Gradient Boosting, Classification Example": [[12, "gradient-boosting-classification-example"]], "Gradient Boosting, Examples of Regression": [[12, "gradient-boosting-examples-of-regression"]], "Gradient Clipping": [[3, "gradient-clipping"]], "Gradient boosting: Basics with Steepest Descent/Functional Gradient Descent": [[12, "gradient-boosting-basics-with-steepest-descent-functional-gradient-descent"]], "Gradient descent": [[4, "gradient-descent"]], "Grading": [[21, "grading"], [21, "id2"], [23, "grading"]], "Housing data, the code": [[2, "housing-data-the-code"]], "How to take derivatives of Matrix-Vector expressions": [[1, "how-to-take-derivatives-of-matrix-vector-expressions"]], "Hyperplanes and all that": [[10, "hyperplanes-and-all-that"]], "Important Matrix and vector handling packages": [[18, "important-matrix-and-vector-handling-packages"]], "Improving performance": [[3, "improving-performance"]], "In summary": [[21, "in-summary"]], "Including Stochastic Gradient Descent with Autograd": [[15, "including-stochastic-gradient-descent-with-autograd"]], "Incremental PCA": [[13, "incremental-pca"]], "Installing R, C++, cython or Julia": [[23, "installing-r-c-cython-or-julia"]], "Installing R, C++, cython, Numba etc": [[23, "installing-r-c-cython-numba-etc"]], "Instructor information": [[21, "instructor-information"]], "Interpretations and optimizing our parameters": [[23, "interpretations-and-optimizing-our-parameters"], [23, "id2"], [23, "id3"]], "Introducing JAX": [[15, "introducing-jax"]], "Introducing the Covariance and Correlation functions": [[13, "introducing-the-covariance-and-correlation-functions"]], "Introduction": [[2, "introduction"], [8, "introduction"], [17, "introduction"], [18, "introduction"]], "Iterative Fitting, Classification and AdaBoost": [[12, "iterative-fitting-classification-and-adaboost"]], "Iterative Fitting, Regression and Squared-error Cost Function": [[12, "iterative-fitting-regression-and-squared-error-cost-function"]], "Kernel PCA": [[13, "kernel-pca"]], "Kernels and non-linearity": [[10, "kernels-and-non-linearity"]], "LU 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"Matrix multiplication": [[3, "matrix-multiplication"]], "Matrix-vector notation and activation": [[14, "matrix-vector-notation-and-activation"]], "Meet the covariance!": [[20, "meet-the-covariance"]], "Meet the Covariance Matrix": [[7, "meet-the-covariance-matrix"]], "Meet the Pandas": [[23, "meet-the-pandas"]], "Momentum based GD": [[15, "momentum-based-gd"]], "More complicated Example: The Ising model": [[8, "more-complicated-example-the-ising-model"]], "More on Dimensionalities": [[5, "more-on-dimensionalities"]], "More on Rescaling data": [[8, "more-on-rescaling-data"]], "Multilayer perceptrons": [[14, "multilayer-perceptrons"]], "Network requirements": [[4, "network-requirements"]], "Neural Networks vs CNNs": [[5, "neural-networks-vs-cnns"]], "Neural networks": [[14, null]], "Numerical experiments and the covariance, central limit theorem": [[20, "numerical-experiments-and-the-covariance-central-limit-theorem"]], "Numpy and arrays": [[18, "numpy-and-arrays"], [23, "numpy-and-arrays"]], "Numpy examples and Important Matrix and vector handling packages": [[23, "numpy-examples-and-important-matrix-and-vector-handling-packages"]], "Optimization, the central part of any Machine Learning algortithm": [[15, null]], "Optimizing our parameters": [[23, "optimizing-our-parameters"]], "Optimizing our parameters, more details": [[23, "optimizing-our-parameters-more-details"]], "Optimizing the cost function": [[3, "optimizing-the-cost-function"]], "Organizing our data": [[2, "organizing-our-data"], [23, "organizing-our-data"]], "Other Matrix and Vector Operations": [[18, "other-matrix-and-vector-operations"]], "Other Types of Recurrent Neural Networks": [[6, "other-types-of-recurrent-neural-networks"]], "Other courses on Data science and Machine Learning at UiO": [[23, "other-courses-on-data-science-and-machine-learning-at-uio"]], "Other courses on Data science and Machine Learning at UiO, contn": [[23, "other-courses-on-data-science-and-machine-learning-at-uio-contn"]], "Other popular texts": [[23, "other-popular-texts"]], "Other techniques": [[13, "other-techniques"]], "Other types of networks": [[14, "other-types-of-networks"]], "Other ways of visualizing the trees": [[11, "other-ways-of-visualizing-the-trees"]], "Our model for the nuclear binding energies": [[23, "our-model-for-the-nuclear-binding-energies"]], "Overview of first week": [[23, "overview-of-first-week"]], "Own code for Ordinary Least Squares": [[23, "own-code-for-ordinary-least-squares"]], "PCA and scikit-learn": [[13, "pca-and-scikit-learn"]], "Pandas AI": [[23, "pandas-ai"]], "Partial Differential Equations": [[4, "partial-differential-equations"]], "Practical tips": [[15, "practical-tips"]], "Practicalities": [[21, "practicalities"], [21, "id1"]], "Predicting New Points With A Trained Recurrent Neural Network": [[6, "predicting-new-points-with-a-trained-recurrent-neural-network"]], "Prerequisites": [[23, 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"wave": 4, "we": 23, "week": [0, 1, 23], "what": [2, 23], "which": 3, "why": 23, "wisconsin": 9, "write": [6, 13], "xgboost": 12, "your": [1, 2, 12]}}) \ No newline at end of file diff --git a/doc/LectureNotes/_build/jupyter_execute/E1.ipynb b/doc/LectureNotes/_build/jupyter_execute/E1.ipynb index a53aabbdf..989dc907a 100644 --- a/doc/LectureNotes/_build/jupyter_execute/E1.ipynb +++ b/doc/LectureNotes/_build/jupyter_execute/E1.ipynb @@ -19,7 +19,7 @@ "\n", "In this first week will focus on getting you set up with the programs you are going to be using throughout this course. We expect that many of you will encounter some trouble with setting these programs up, as they can be extremely finnicky and prone to not working the same on all machines, so we strongly encourage you to not get discouraged, and to show up to the group-sessions where we can help you along. The group sessions are also the best place to find group partners for the projects and to be challenged on your understanding of the material, which are both essential to doing well in this course. We strongly encourage you to form groups of 2-3 participants. \n", "\n", - "If you are unable to complete this weekss exercises, don't worry, this will likely be the most frustrating week for many of you. You have time to get back on track next week, especially if you come to the group-sessions! Note also that this week's set of exercises does not count for the additional score. The deadline for the weekly exercises is set to Fridays, at midnight." + "If you are unable to complete this week's exercises, don't worry, this will likely be the most frustrating week for many of you. You have time to get back on track next week, especially if you come to the group-sessions! Note also that this week's set of exercises does not count for the additional score. The deadline for the weekly exercises is set to Fridays, at midnight." ] }, {