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small update on neural networks

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mhjensen
2018-10-16 13:54:54 +02:00
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@@ -92,54 +92,55 @@ Automatically generated HTML file from DocOnce source
'___sec30'),
('Defining the cost function', 2, None, '___sec31'),
('Example: binary classification problem', 2, None, '___sec32'),
('The Softmax function', 2, None, '___sec33'),
('Developing a code for doing neural networks with back '
'propagation',
2,
None,
'___sec33'),
('Collect and pre-process data', 2, None, '___sec34'),
('Train and test datasets', 2, None, '___sec35'),
('Define model and architecture', 2, None, '___sec36'),
('Layers', 2, None, '___sec37'),
('Weights and biases', 2, None, '___sec38'),
('Feed-forward pass', 2, None, '___sec39'),
('Matrix multiplications', 2, None, '___sec40'),
('Choose cost function and optimizer', 2, None, '___sec41'),
('Optimizing the cost function', 2, None, '___sec42'),
('Regularization', 2, None, '___sec43'),
('Matrix multiplication', 2, None, '___sec44'),
('Improving performance', 2, None, '___sec45'),
('Full object-oriented implementation', 2, None, '___sec46'),
('Evaluate model performance on test data', 2, None, '___sec47'),
('Adjust hyperparameters', 2, None, '___sec48'),
('Visualization', 2, None, '___sec49'),
('scikit-learn implementation', 2, None, '___sec50'),
('Visualization', 2, None, '___sec51'),
'___sec34'),
('Collect and pre-process data', 2, None, '___sec35'),
('Train and test datasets', 2, None, '___sec36'),
('Define model and architecture', 2, None, '___sec37'),
('Layers', 2, None, '___sec38'),
('Weights and biases', 2, None, '___sec39'),
('Feed-forward pass', 2, None, '___sec40'),
('Matrix multiplications', 2, None, '___sec41'),
('Choose cost function and optimizer', 2, None, '___sec42'),
('Optimizing the cost function', 2, None, '___sec43'),
('Regularization', 2, None, '___sec44'),
('Matrix multiplication', 2, None, '___sec45'),
('Improving performance', 2, None, '___sec46'),
('Full object-oriented implementation', 2, None, '___sec47'),
('Evaluate model performance on test data', 2, None, '___sec48'),
('Adjust hyperparameters', 2, None, '___sec49'),
('Visualization', 2, None, '___sec50'),
('scikit-learn implementation', 2, None, '___sec51'),
('Visualization', 2, None, '___sec52'),
('Building neural networks in Tensorflow and Keras',
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'___sec52'),
('Tensorflow', 2, None, '___sec53'),
('Collect and pre-process data', 2, None, '___sec54'),
('Using TensorFlow backend', 2, None, '___sec55'),
('Optimizing and using gradient descent', 2, None, '___sec56'),
('Using Keras', 2, None, '___sec57'),
('Which activation function should I use?', 2, None, '___sec58'),
'___sec53'),
('Tensorflow', 2, None, '___sec54'),
('Collect and pre-process data', 2, None, '___sec55'),
('Using TensorFlow backend', 2, None, '___sec56'),
('Optimizing and using gradient descent', 2, None, '___sec57'),
('Using Keras', 2, None, '___sec58'),
('Which activation function should I use?', 2, None, '___sec59'),
('Is the Logistic activation function (Sigmoid) our choice?',
2,
None,
'___sec59'),
('The derivative of the Logistic funtion', 2, None, '___sec60'),
('The RELU function family', 2, None, '___sec61'),
('Which activation function should we use?', 2, None, '___sec62'),
'___sec60'),
('The derivative of the Logistic funtion', 2, None, '___sec61'),
('The RELU function family', 2, None, '___sec62'),
('Which activation function should we use?', 2, None, '___sec63'),
('A top-down perspective on Neural networks',
2,
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'___sec63'),
'___sec64'),
('Limitations of supervised learning with deep networks',
2,
None,
'___sec64')]}
'___sec65')]}
end of tocinfo -->
<body>
@@ -210,38 +211,39 @@ MathJax.Hub.Config({
<!-- navigation toc: --> <li><a href="._NeuralNet-bs031.html#___sec30" style="font-size: 80%;"><b>Setting up a Multi-layer perceptron model for classification</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs032.html#___sec31" style="font-size: 80%;"><b>Defining the cost function</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs033.html#___sec32" style="font-size: 80%;"><b>Example: binary classification problem</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs034.html#___sec33" style="font-size: 80%;"><b>Developing a code for doing neural networks with back propagation</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs035.html#___sec34" style="font-size: 80%;"><b>Collect and pre-process data</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs036.html#___sec35" style="font-size: 80%;"><b>Train and test datasets</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs037.html#___sec36" style="font-size: 80%;"><b>Define model and architecture</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs038.html#___sec37" style="font-size: 80%;"><b>Layers</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs039.html#___sec38" style="font-size: 80%;"><b>Weights and biases</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs040.html#___sec39" style="font-size: 80%;"><b>Feed-forward pass</b></a></li>
<!-- navigation toc: --> <li><a href="#___sec40" style="font-size: 80%;"><b>Matrix multiplications</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs042.html#___sec41" style="font-size: 80%;"><b>Choose cost function and optimizer</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs043.html#___sec42" style="font-size: 80%;"><b>Optimizing the cost function</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs044.html#___sec43" style="font-size: 80%;"><b>Regularization</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs045.html#___sec44" style="font-size: 80%;"><b>Matrix multiplication</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs046.html#___sec45" style="font-size: 80%;"><b>Improving performance</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs047.html#___sec46" style="font-size: 80%;"><b>Full object-oriented implementation</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs048.html#___sec47" style="font-size: 80%;"><b>Evaluate model performance on test data</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs049.html#___sec48" style="font-size: 80%;"><b>Adjust hyperparameters</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs050.html#___sec49" style="font-size: 80%;"><b>Visualization</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs051.html#___sec50" style="font-size: 80%;"><b>scikit-learn implementation</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs052.html#___sec51" style="font-size: 80%;"><b>Visualization</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs053.html#___sec52" style="font-size: 80%;"><b>Building neural networks in Tensorflow and Keras</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs054.html#___sec53" style="font-size: 80%;"><b>Tensorflow</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs055.html#___sec54" style="font-size: 80%;"><b>Collect and pre-process data</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs056.html#___sec55" style="font-size: 80%;"><b>Using TensorFlow backend</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs057.html#___sec56" style="font-size: 80%;"><b>Optimizing and using gradient descent</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs058.html#___sec57" style="font-size: 80%;"><b>Using Keras</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs059.html#___sec58" style="font-size: 80%;"><b>Which activation function should I use?</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs060.html#___sec59" style="font-size: 80%;"><b>Is the Logistic activation function (Sigmoid) our choice?</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs061.html#___sec60" style="font-size: 80%;"><b>The derivative of the Logistic funtion</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs062.html#___sec61" style="font-size: 80%;"><b>The RELU function family</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs063.html#___sec62" style="font-size: 80%;"><b>Which activation function should we use?</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs064.html#___sec63" style="font-size: 80%;"><b>A top-down perspective on Neural networks</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs065.html#___sec64" style="font-size: 80%;"><b>Limitations of supervised learning with deep networks</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs034.html#___sec33" style="font-size: 80%;"><b>The Softmax function</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs035.html#___sec34" style="font-size: 80%;"><b>Developing a code for doing neural networks with back propagation</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs036.html#___sec35" style="font-size: 80%;"><b>Collect and pre-process data</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs037.html#___sec36" style="font-size: 80%;"><b>Train and test datasets</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs038.html#___sec37" style="font-size: 80%;"><b>Define model and architecture</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs039.html#___sec38" style="font-size: 80%;"><b>Layers</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs040.html#___sec39" style="font-size: 80%;"><b>Weights and biases</b></a></li>
<!-- navigation toc: --> <li><a href="#___sec40" style="font-size: 80%;"><b>Feed-forward pass</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs042.html#___sec41" style="font-size: 80%;"><b>Matrix multiplications</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs043.html#___sec42" style="font-size: 80%;"><b>Choose cost function and optimizer</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs044.html#___sec43" style="font-size: 80%;"><b>Optimizing the cost function</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs045.html#___sec44" style="font-size: 80%;"><b>Regularization</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs046.html#___sec45" style="font-size: 80%;"><b>Matrix multiplication</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs047.html#___sec46" style="font-size: 80%;"><b>Improving performance</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs048.html#___sec47" style="font-size: 80%;"><b>Full object-oriented implementation</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs049.html#___sec48" style="font-size: 80%;"><b>Evaluate model performance on test data</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs050.html#___sec49" style="font-size: 80%;"><b>Adjust hyperparameters</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs051.html#___sec50" style="font-size: 80%;"><b>Visualization</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs052.html#___sec51" style="font-size: 80%;"><b>scikit-learn implementation</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs053.html#___sec52" style="font-size: 80%;"><b>Visualization</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs054.html#___sec53" style="font-size: 80%;"><b>Building neural networks in Tensorflow and Keras</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs055.html#___sec54" style="font-size: 80%;"><b>Tensorflow</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs056.html#___sec55" style="font-size: 80%;"><b>Collect and pre-process data</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs057.html#___sec56" style="font-size: 80%;"><b>Using TensorFlow backend</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs058.html#___sec57" style="font-size: 80%;"><b>Optimizing and using gradient descent</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs059.html#___sec58" style="font-size: 80%;"><b>Using Keras</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs060.html#___sec59" style="font-size: 80%;"><b>Which activation function should I use?</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs061.html#___sec60" style="font-size: 80%;"><b>Is the Logistic activation function (Sigmoid) our choice?</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs062.html#___sec61" style="font-size: 80%;"><b>The derivative of the Logistic funtion</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs063.html#___sec62" style="font-size: 80%;"><b>The RELU function family</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs064.html#___sec63" style="font-size: 80%;"><b>Which activation function should we use?</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs065.html#___sec64" style="font-size: 80%;"><b>A top-down perspective on Neural networks</b></a></li>
<!-- navigation toc: --> <li><a href="._NeuralNet-bs066.html#___sec65" style="font-size: 80%;"><b>Limitations of supervised learning with deep networks</b></a></li>
</ul>
</li>
@@ -255,80 +257,32 @@ MathJax.Hub.Config({
<p>&nbsp;</p><p>&nbsp;</p><p>&nbsp;</p> <!-- add vertical space -->
<a name="part0041"></a>
<!-- !split -->
<!-- !split -->
<h2 id="___sec40" class="anchor">Matrix multiplications </h2>
<h2 id="___sec40" class="anchor">Feed-forward pass </h2>
<p>
Since our data has the dimensions \( X = (n_{inputs}, n_{features}) \) and our weights to the hidden
layer have the dimensions
\( W_{hidden} = (n_{features}, n_{hidden}) \),
we can easily feed the network all our training data in one go by taking the matrix product
Denote \( F \) the number of features, \( H \) the number of hidden neurons and \( C \) the number of categories.
For each input image we calculate a weighted sum of input features (pixel values) to each neuron \( j \) in the hidden layer \( l \):
$$ X W^{h} = (n_{inputs}, n_{hidden}),$$
$$ z_{j}^{l} = \sum_{i=1}^{F} w_{ij}^{l} x_i + b_{j}^{l},$$
<p>
and obtain a matrix that holds the weighted sum of inputs to the hidden layer
for each input image and each hidden neuron.
We also add the bias to obtain a matrix of weighted sums to the hidden layer \( Z^{h} \):
this is then passed through our activation function
$$ \hat{z}^{l} = \hat{X} \hat{W}^{l} + \hat{b}^{l} ,$$
$$ a_{j}^{l} = f(z_{j}^{l}) .$$
<p>
meaning the same bias (1D array with size equal number of hidden neurons) is added to each input image.
This is then passed through the activation:
We calculate a weighted sum of inputs (activations in the hidden layer) to each neuron \( j \) in the output layer:
$$ \hat{a}^{l} = f(\hat{z}^l) .$$
$$ z_{j}^{L} = \sum_{i=1}^{H} w_{ij}^{L} a_{i}^{l} + b_{j}^{L}.$$
<p>
This is fed to the output layer:
Finally we calculate the output of neuron \( j \) in the output layer using the softmax function:
$$ \hat{z}^{L} = \hat{a}^{L} \hat{W}^{L} + \hat{b}^{L} .$$
$$ a_{j}^{L} = \frac{\exp{(z_j^{L})}}
{\sum_{c=0}^{C-1} \exp{(z_c^{L})}} .$$
<p>
Finally we receive our output values for each image and each category by passing it through the softmax function:
$$ output = softmax (\hat{z}^{L}) = (n_{inputs}, n_{categories}) .$$
<p>
<!-- code=python (!bc pycod) typeset with pygments style "default" -->
<div class="highlight" style="background: #f8f8f8"><pre style="line-height: 125%"><span></span><span style="color: #408080; font-style: italic"># setup the feed-forward pass, subscript h = hidden layer</span>
<span style="color: #008000; font-weight: bold">def</span> <span style="color: #0000FF">sigmoid</span>(x):
<span style="color: #008000; font-weight: bold">return</span> <span style="color: #666666">1/</span>(<span style="color: #666666">1</span> <span style="color: #666666">+</span> np<span style="color: #666666">.</span>exp(<span style="color: #666666">-</span>x))
<span style="color: #008000; font-weight: bold">def</span> <span style="color: #0000FF">feed_forward</span>(X):
<span style="color: #408080; font-style: italic"># weighted sum of inputs to the hidden layer</span>
z_h <span style="color: #666666">=</span> np<span style="color: #666666">.</span>matmul(X, hidden_weights) <span style="color: #666666">+</span> hidden_bias
<span style="color: #408080; font-style: italic"># activation in the hidden layer</span>
a_h <span style="color: #666666">=</span> sigmoid(z_h)
<span style="color: #408080; font-style: italic"># weighted sum of inputs to the output layer</span>
z_o <span style="color: #666666">=</span> np<span style="color: #666666">.</span>matmul(a_h, output_weights) <span style="color: #666666">+</span> output_bias
<span style="color: #408080; font-style: italic"># softmax output</span>
<span style="color: #408080; font-style: italic"># axis 0 holds each input and axis 1 the probabilities of each category</span>
exp_term <span style="color: #666666">=</span> np<span style="color: #666666">.</span>exp(z_o)
probabilities <span style="color: #666666">=</span> exp_term <span style="color: #666666">/</span> np<span style="color: #666666">.</span>sum(exp_term, axis<span style="color: #666666">=1</span>, keepdims<span style="color: #666666">=</span><span style="color: #008000">True</span>)
<span style="color: #008000; font-weight: bold">return</span> probabilities
probabilities <span style="color: #666666">=</span> feed_forward(X_train)
<span style="color: #008000; font-weight: bold">print</span>(<span style="color: #BA2121">&quot;probabilities = (n_inputs, n_categories) = &quot;</span> <span style="color: #666666">+</span> <span style="color: #008000">str</span>(probabilities<span style="color: #666666">.</span>shape))
<span style="color: #008000; font-weight: bold">print</span>(<span style="color: #BA2121">&quot;probability that image 0 is in category 0,1,2,...,9 = </span><span style="color: #BB6622; font-weight: bold">\n</span><span style="color: #BA2121">&quot;</span> <span style="color: #666666">+</span> <span style="color: #008000">str</span>(probabilities[<span style="color: #666666">0</span>]))
<span style="color: #008000; font-weight: bold">print</span>(<span style="color: #BA2121">&quot;probabilities sum up to: &quot;</span> <span style="color: #666666">+</span> <span style="color: #008000">str</span>(probabilities[<span style="color: #666666">0</span>]<span style="color: #666666">.</span>sum()))
<span style="color: #008000; font-weight: bold">print</span>()
<span style="color: #408080; font-style: italic"># we obtain a prediction by taking the class with the highest likelihood</span>
<span style="color: #008000; font-weight: bold">def</span> <span style="color: #0000FF">predict</span>(X):
probabilities <span style="color: #666666">=</span> feed_forward(X)
<span style="color: #008000; font-weight: bold">return</span> np<span style="color: #666666">.</span>argmax(probabilities, axis<span style="color: #666666">=1</span>)
predictions <span style="color: #666666">=</span> predict(X_train)
<span style="color: #008000; font-weight: bold">print</span>(<span style="color: #BA2121">&quot;predictions = (n_inputs) = &quot;</span> <span style="color: #666666">+</span> <span style="color: #008000">str</span>(predictions<span style="color: #666666">.</span>shape))
<span style="color: #008000; font-weight: bold">print</span>(<span style="color: #BA2121">&quot;prediction for image 0: &quot;</span> <span style="color: #666666">+</span> <span style="color: #008000">str</span>(predictions[<span style="color: #666666">0</span>]))
<span style="color: #008000; font-weight: bold">print</span>(<span style="color: #BA2121">&quot;correct label for image 0: &quot;</span> <span style="color: #666666">+</span> <span style="color: #008000">str</span>(Y_train[<span style="color: #666666">0</span>]))
</pre></div>
<p>
<p>
<!-- navigation buttons at the bottom of the page -->
@@ -355,7 +309,7 @@ predictions <span style="color: #666666">=</span> predict(X_train)
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