From 98389d1368b9f25928ec2cbe468452fd9c3dd9b9 Mon Sep 17 00:00:00 2001 From: mhjensen Date: Fri, 1 Dec 2017 22:54:29 +0100 Subject: [PATCH] update on how to read data --- .../html/._How2ReadData-bs000.html | 82 ++- .../html/._How2ReadData-bs001.html | 81 ++- .../How2ReadData/html/How2ReadData-bs.html | 82 ++- .../html/How2ReadData-reveal.html | 478 +++++++++++++++- .../html/How2ReadData-solarized.html | 523 +++++++++++++++++- doc/pub/How2ReadData/html/How2ReadData.html | 523 +++++++++++++++++- doc/pub/How2ReadData/ipynb/How2ReadData.ipynb | 455 ++++++++++++++- .../ipynb/ipynb-How2ReadData-src.tar.gz | Bin 215 -> 113365 bytes .../pdf/How2ReadData-beamer-handouts2x3.pdf | Bin 150890 -> 296032 bytes .../How2ReadData/pdf/How2ReadData-beamer.pdf | Bin 138272 -> 279262 bytes .../How2ReadData/pdf/How2ReadData-minted.pdf | Bin 255686 -> 331374 bytes doc/src/How2ReadData/How2ReadData.do.txt | 274 +++++++++ doc/src/How2ReadData/fig/Hudson_Bay_data.pdf | Bin 0 -> 15045 bytes doc/src/How2ReadData/fig/Hudson_Bay_data.png | Bin 0 -> 53586 bytes doc/src/How2ReadData/fig/Hudson_Bay_sim.pdf | Bin 0 -> 18298 bytes doc/src/How2ReadData/fig/Hudson_Bay_sim.png | Bin 0 -> 65901 bytes doc/src/How2ReadData/src/Hudson_Bay.csv | 22 + doc/src/How2ReadData/src/Hudson_Bay.py | 43 ++ doc/src/How2ReadData/src/Hudson_Bay_sim.pdf | Bin 0 -> 17919 bytes doc/src/How2ReadData/src/Hudson_Bay_sim.png | Bin 0 -> 67454 bytes doc/src/How2ReadData/src/diffeq.py | 12 + doc/src/How2ReadData/src/ecoli.csv | 11 + doc/src/How2ReadData/src/ecoli.py | 27 + doc/src/How2ReadData/src/ecoli_inverse.py | 27 + doc/src/How2ReadData/src/plot_Hudson.py | 19 + 25 files changed, 2615 insertions(+), 44 deletions(-) create mode 100644 doc/src/How2ReadData/fig/Hudson_Bay_data.pdf create mode 100644 doc/src/How2ReadData/fig/Hudson_Bay_data.png create mode 100644 doc/src/How2ReadData/fig/Hudson_Bay_sim.pdf create mode 100644 doc/src/How2ReadData/fig/Hudson_Bay_sim.png create mode 100644 doc/src/How2ReadData/src/Hudson_Bay.csv create mode 100644 doc/src/How2ReadData/src/Hudson_Bay.py create mode 100644 doc/src/How2ReadData/src/Hudson_Bay_sim.pdf create mode 100644 doc/src/How2ReadData/src/Hudson_Bay_sim.png create mode 100644 doc/src/How2ReadData/src/diffeq.py create mode 100644 doc/src/How2ReadData/src/ecoli.csv create mode 100644 doc/src/How2ReadData/src/ecoli.py create mode 100644 doc/src/How2ReadData/src/ecoli_inverse.py create mode 100644 doc/src/How2ReadData/src/plot_Hudson.py diff --git a/doc/pub/How2ReadData/html/._How2ReadData-bs000.html b/doc/pub/How2ReadData/html/._How2ReadData-bs000.html index f9424edda..2e49e32ac 100644 --- a/doc/pub/How2ReadData/html/._How2ReadData-bs000.html +++ b/doc/pub/How2ReadData/html/._How2ReadData-bs000.html @@ -45,17 +45,66 @@ Automatically generated HTML file from DocOnce source ('Different algorithms', 2, None, '___sec2'), ('Software and needed installations', 2, None, '___sec3'), ('Python installers', 2, None, '___sec4'), - ('Installing R and C++', 2, None, '___sec5'), + ('Installing R, C++, cython or Julia', 2, None, '___sec5'), ('Introduction to Jupyter notebook and available tools', 2, None, '___sec6'), - ('Representing data, overarching aims', 2, None, '___sec7'), - ('Representing data, more examples', 2, None, '___sec8')]} + ('Doing it in R', 2, None, '___sec7'), + ('Representing data, overarching aims', 2, None, '___sec8'), + ('Representing data, more examples', 2, None, '___sec9'), + ('Binning of data', 2, None, '___sec10'), + ('Adding model complexity: Predator-Prey model from ecology', + 2, + None, + '___sec11'), + ('Case study from Hudson bay', 2, None, '___sec12'), + ('Hudson bay data', 2, None, '___sec13'), + ('Plotting the data', 2, None, '___sec14'), + ('Hares and lynx in Hudson bay from 1900 to 1920', + 2, + None, + '___sec15'), + ('Why now create a computer model for the hare and lynx ' + 'populations?', + 2, + None, + '___sec16'), + ('The traditional (top-down) approach', 2, None, '___sec17'), + ("The ``new'' discrete bottom-up approach", 2, None, '___sec18'), + ('Basic (computer-friendly) mathematics notation', + 2, + None, + '___sec19'), + ('Basic dynamics of the population of hares', + 2, + None, + '___sec20'), + ('Basic dynamics of the population of lynx', 2, None, '___sec21'), + ('Evolution equations', 2, None, '___sec22'), + ('Adapt the model to the Hudson Bay case', 2, None, '___sec23'), + ('The program', 2, None, '___sec24'), + ('The plot', 2, None, '___sec25')]} end of tocinfo --> + + + + + + +