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updating week 46

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mhjensen
2020-11-08 22:48:11 +01:00
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@@ -7,9 +7,9 @@ Automatically generated HTML file from DocOnce source
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
<meta name="generator" content="DocOnce: https://github.com/hplgit/doconce/" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<meta name="description" content="Week 46: Support Vector Machines">
<meta name="description" content="Week 46: Gradient Boosting Summary and Support Vector Machines">
<title>Week 46: Support Vector Machines</title>
<title>Week 46: Gradient Boosting Summary and Support Vector Machines</title>
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<link href="https://netdna.bootstrapcdn.com/bootstrap/3.1.1/css/bootstrap.min.css" rel="stylesheet">
@@ -41,39 +41,40 @@ Automatically generated HTML file from DocOnce source
<!-- tocinfo
{'highest level': 2,
'sections': [('Support Vector Machines, overarching aims', 2, None, '___sec0'),
('Hyperplanes and all that', 2, None, '___sec1'),
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('Getting into the details', 2, None, '___sec5'),
('First attempt at a minimization approach', 2, None, '___sec6'),
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<body>
@@ -103,7 +104,7 @@ MathJax.Hub.Config({
<span class="icon-bar"></span>
<span class="icon-bar"></span>
</button>
<a class="navbar-brand" href="week46-bs.html">Week 46: Support Vector Machines</a>
<a class="navbar-brand" href="week46-bs.html">Week 46: Gradient Boosting Summary and Support Vector Machines</a>
</div>
<div class="navbar-collapse collapse navbar-responsive-collapse">
@@ -111,33 +112,34 @@ MathJax.Hub.Config({
<li class="dropdown">
<a href="#" class="dropdown-toggle" data-toggle="dropdown">Contents <b class="caret"></b></a>
<ul class="dropdown-menu">
<!-- navigation toc: --> <li><a href="._week46-bs001.html#___sec0" style="font-size: 80%;">Support Vector Machines, overarching aims</a></li>
<!-- navigation toc: --> <li><a href="._week46-bs002.html#___sec1" style="font-size: 80%;">Hyperplanes and all that</a></li>
<!-- navigation toc: --> <li><a href="#___sec2" style="font-size: 80%;">What is a hyperplane?</a></li>
<!-- navigation toc: --> <li><a href="._week46-bs004.html#___sec3" style="font-size: 80%;">A \( p \)-dimensional space of features</a></li>
<!-- navigation toc: --> <li><a href="._week46-bs005.html#___sec4" style="font-size: 80%;">The two-dimensional case</a></li>
<!-- navigation toc: --> <li><a href="._week46-bs006.html#___sec5" style="font-size: 80%;">Getting into the details</a></li>
<!-- navigation toc: --> <li><a href="._week46-bs007.html#___sec6" style="font-size: 80%;">First attempt at a minimization approach</a></li>
<!-- navigation toc: --> <li><a href="._week46-bs008.html#___sec7" style="font-size: 80%;">Solving the equations</a></li>
<!-- navigation toc: --> <li><a href="._week46-bs009.html#___sec8" style="font-size: 80%;">Code Example</a></li>
<!-- navigation toc: --> <li><a href="._week46-bs010.html#___sec9" style="font-size: 80%;">Problems with the Simpler Approach</a></li>
<!-- navigation toc: --> <li><a href="._week46-bs011.html#___sec10" style="font-size: 80%;">A better approach</a></li>
<!-- navigation toc: --> <li><a href="._week46-bs012.html#___sec11" style="font-size: 80%;">A quick Reminder on Lagrangian Multipliers</a></li>
<!-- navigation toc: --> <li><a href="._week46-bs013.html#___sec12" style="font-size: 80%;">Adding the Multiplier</a></li>
<!-- navigation toc: --> <li><a href="._week46-bs014.html#___sec13" style="font-size: 80%;">Setting up the Problem</a></li>
<!-- navigation toc: --> <li><a href="._week46-bs015.html#___sec14" style="font-size: 80%;">The problem to solve</a></li>
<!-- navigation toc: --> <li><a href="._week46-bs016.html#___sec15" style="font-size: 80%;">The last steps</a></li>
<!-- navigation toc: --> <li><a href="._week46-bs017.html#___sec16" style="font-size: 80%;">A soft classifier</a></li>
<!-- navigation toc: --> <li><a href="._week46-bs018.html#___sec17" style="font-size: 80%;">Soft optmization problem</a></li>
<!-- navigation toc: --> <li><a href="._week46-bs019.html#___sec18" style="font-size: 80%;">Kernels and non-linearity</a></li>
<!-- navigation toc: --> <li><a href="._week46-bs020.html#___sec19" style="font-size: 80%;">The equations</a></li>
<!-- navigation toc: --> <li><a href="._week46-bs021.html#___sec20" style="font-size: 80%;">The problem to solve</a></li>
<!-- navigation toc: --> <li><a href="._week46-bs022.html#___sec21" style="font-size: 80%;">Different kernels and Mercer's theorem</a></li>
<!-- navigation toc: --> <li><a href="._week46-bs023.html#___sec22" style="font-size: 80%;">The moons example</a></li>
<!-- navigation toc: --> <li><a href="._week46-bs024.html#___sec23" style="font-size: 80%;">Mathematical optimization of convex functions</a></li>
<!-- navigation toc: --> <li><a href="._week46-bs025.html#___sec24" style="font-size: 80%;">How do we solve these problems?</a></li>
<!-- navigation toc: --> <li><a href="._week46-bs026.html#___sec25" style="font-size: 80%;">A simple example</a></li>
<!-- navigation toc: --> <li><a href="._week46-bs027.html#___sec26" style="font-size: 80%;">Back to the more realistic cases</a></li>
<!-- navigation toc: --> <li><a href="._week46-bs001.html#___sec0" style="font-size: 80%;">Overview of week 46</a></li>
<!-- navigation toc: --> <li><a href="._week46-bs002.html#___sec1" style="font-size: 80%;">Support Vector Machines, overarching aims</a></li>
<!-- navigation toc: --> <li><a href="#___sec2" style="font-size: 80%;">Hyperplanes and all that</a></li>
<!-- navigation toc: --> <li><a href="._week46-bs004.html#___sec3" style="font-size: 80%;">What is a hyperplane?</a></li>
<!-- navigation toc: --> <li><a href="._week46-bs005.html#___sec4" style="font-size: 80%;">A \( p \)-dimensional space of features</a></li>
<!-- navigation toc: --> <li><a href="._week46-bs006.html#___sec5" style="font-size: 80%;">The two-dimensional case</a></li>
<!-- navigation toc: --> <li><a href="._week46-bs007.html#___sec6" style="font-size: 80%;">Getting into the details</a></li>
<!-- navigation toc: --> <li><a href="._week46-bs008.html#___sec7" style="font-size: 80%;">First attempt at a minimization approach</a></li>
<!-- navigation toc: --> <li><a href="._week46-bs009.html#___sec8" style="font-size: 80%;">Solving the equations</a></li>
<!-- navigation toc: --> <li><a href="._week46-bs010.html#___sec9" style="font-size: 80%;">Code Example</a></li>
<!-- navigation toc: --> <li><a href="._week46-bs011.html#___sec10" style="font-size: 80%;">Problems with the Simpler Approach</a></li>
<!-- navigation toc: --> <li><a href="._week46-bs012.html#___sec11" style="font-size: 80%;">A better approach</a></li>
<!-- navigation toc: --> <li><a href="._week46-bs013.html#___sec12" style="font-size: 80%;">A quick Reminder on Lagrangian Multipliers</a></li>
<!-- navigation toc: --> <li><a href="._week46-bs014.html#___sec13" style="font-size: 80%;">Adding the Multiplier</a></li>
<!-- navigation toc: --> <li><a href="._week46-bs015.html#___sec14" style="font-size: 80%;">Setting up the Problem</a></li>
<!-- navigation toc: --> <li><a href="._week46-bs016.html#___sec15" style="font-size: 80%;">The problem to solve</a></li>
<!-- navigation toc: --> <li><a href="._week46-bs017.html#___sec16" style="font-size: 80%;">The last steps</a></li>
<!-- navigation toc: --> <li><a href="._week46-bs018.html#___sec17" style="font-size: 80%;">A soft classifier</a></li>
<!-- navigation toc: --> <li><a href="._week46-bs019.html#___sec18" style="font-size: 80%;">Soft optmization problem</a></li>
<!-- navigation toc: --> <li><a href="._week46-bs020.html#___sec19" style="font-size: 80%;">Kernels and non-linearity</a></li>
<!-- navigation toc: --> <li><a href="._week46-bs021.html#___sec20" style="font-size: 80%;">The equations</a></li>
<!-- navigation toc: --> <li><a href="._week46-bs022.html#___sec21" style="font-size: 80%;">The problem to solve</a></li>
<!-- navigation toc: --> <li><a href="._week46-bs023.html#___sec22" style="font-size: 80%;">Different kernels and Mercer's theorem</a></li>
<!-- navigation toc: --> <li><a href="._week46-bs024.html#___sec23" style="font-size: 80%;">The moons example</a></li>
<!-- navigation toc: --> <li><a href="._week46-bs025.html#___sec24" style="font-size: 80%;">Mathematical optimization of convex functions</a></li>
<!-- navigation toc: --> <li><a href="._week46-bs026.html#___sec25" style="font-size: 80%;">How do we solve these problems?</a></li>
<!-- navigation toc: --> <li><a href="._week46-bs027.html#___sec26" style="font-size: 80%;">A simple example</a></li>
<!-- navigation toc: --> <li><a href="._week46-bs028.html#___sec27" style="font-size: 80%;">Back to the more realistic cases</a></li>
</ul>
</li>
@@ -153,34 +155,90 @@ MathJax.Hub.Config({
<a name="part0003"></a>
<!-- !split -->
<h2 id="___sec2" class="anchor">What is a hyperplane? </h2>
<h2 id="___sec2" class="anchor">Hyperplanes and all that </h2>
<p>
The aim of the SVM algorithm is to find a hyperplane in a
\( p \)-dimensional space, where \( p \) is the number of features that
distinctly classifies the data points.
The theory behind support vector machines (SVM hereafter) is based on
the mathematical description of so-called hyperplanes. Let us start
with a two-dimensional case. This will also allow us to introduce our
first SVM examples. These will be tailored to the case of two specific
classes, as displayed in the figure here based on the usage of the petal data.
<p>
In a \( p \)-dimensional space, a hyperplane is what we call an affine subspace of dimension of \( p-1 \).
As an example, in two dimension, a hyperplane is simply as straight line while in three dimensions it is
a two-dimensional subspace, or stated simply, a plane.
We assume here that our data set can be well separated into two
domains, where a straight line does the job in the separating the two
classes. Here the two classes are represented by either squares or
circles.
<p>
In two dimensions, with the variables \( x_1 \) and \( x_2 \), the hyperplane is defined as
$$
b+w_1x_1+w_2x_2=0,
$$
<p>
where \( b \) is the intercept and \( w_1 \) and \( w_2 \) define the elements of a vector orthogonal to the line
\( b+w_1x_1+w_2x_2=0 \).
In two dimensions we define the vectors \( \boldsymbol{x} =[x1,x2] \) and \( \boldsymbol{w}=[w1,w2] \).
We can then rewrite the above equation as
<!-- code=python (!bc pycod) typeset with pygments style "default" -->
<div class="highlight" style="background: #f8f8f8"><pre style="line-height: 125%"><span></span><span style="color: #008000; font-weight: bold">from</span> <span style="color: #0000FF; font-weight: bold">sklearn</span> <span style="color: #008000; font-weight: bold">import</span> datasets
<span style="color: #008000; font-weight: bold">from</span> <span style="color: #0000FF; font-weight: bold">sklearn.svm</span> <span style="color: #008000; font-weight: bold">import</span> SVC, LinearSVC
<span style="color: #008000; font-weight: bold">from</span> <span style="color: #0000FF; font-weight: bold">sklearn.linear_model</span> <span style="color: #008000; font-weight: bold">import</span> SGDClassifier
<span style="color: #008000; font-weight: bold">from</span> <span style="color: #0000FF; font-weight: bold">sklearn.preprocessing</span> <span style="color: #008000; font-weight: bold">import</span> StandardScaler
<span style="color: #008000; font-weight: bold">import</span> <span style="color: #0000FF; font-weight: bold">matplotlib</span>
<span style="color: #008000; font-weight: bold">import</span> <span style="color: #0000FF; font-weight: bold">matplotlib.pyplot</span> <span style="color: #008000; font-weight: bold">as</span> <span style="color: #0000FF; font-weight: bold">plt</span>
plt<span style="color: #666666">.</span>rcParams[<span style="color: #BA2121">&#39;axes.labelsize&#39;</span>] <span style="color: #666666">=</span> <span style="color: #666666">14</span>
plt<span style="color: #666666">.</span>rcParams[<span style="color: #BA2121">&#39;xtick.labelsize&#39;</span>] <span style="color: #666666">=</span> <span style="color: #666666">12</span>
plt<span style="color: #666666">.</span>rcParams[<span style="color: #BA2121">&#39;ytick.labelsize&#39;</span>] <span style="color: #666666">=</span> <span style="color: #666666">12</span>
$$
\boldsymbol{x}^T\boldsymbol{w}+b=0.
$$
iris <span style="color: #666666">=</span> datasets<span style="color: #666666">.</span>load_iris()
X <span style="color: #666666">=</span> iris[<span style="color: #BA2121">&quot;data&quot;</span>][:, (<span style="color: #666666">2</span>, <span style="color: #666666">3</span>)] <span style="color: #408080; font-style: italic"># petal length, petal width</span>
y <span style="color: #666666">=</span> iris[<span style="color: #BA2121">&quot;target&quot;</span>]
setosa_or_versicolor <span style="color: #666666">=</span> (y <span style="color: #666666">==</span> <span style="color: #666666">0</span>) <span style="color: #666666">|</span> (y <span style="color: #666666">==</span> <span style="color: #666666">1</span>)
X <span style="color: #666666">=</span> X[setosa_or_versicolor]
y <span style="color: #666666">=</span> y[setosa_or_versicolor]
C <span style="color: #666666">=</span> <span style="color: #666666">5</span>
alpha <span style="color: #666666">=</span> <span style="color: #666666">1</span> <span style="color: #666666">/</span> (C <span style="color: #666666">*</span> <span style="color: #008000">len</span>(X))
lin_clf <span style="color: #666666">=</span> LinearSVC(loss<span style="color: #666666">=</span><span style="color: #BA2121">&quot;hinge&quot;</span>, C<span style="color: #666666">=</span>C, random_state<span style="color: #666666">=42</span>)
svm_clf <span style="color: #666666">=</span> SVC(kernel<span style="color: #666666">=</span><span style="color: #BA2121">&quot;linear&quot;</span>, C<span style="color: #666666">=</span>C)
sgd_clf <span style="color: #666666">=</span> SGDClassifier(loss<span style="color: #666666">=</span><span style="color: #BA2121">&quot;hinge&quot;</span>, learning_rate<span style="color: #666666">=</span><span style="color: #BA2121">&quot;constant&quot;</span>, eta0<span style="color: #666666">=0.001</span>, alpha<span style="color: #666666">=</span>alpha,
max_iter<span style="color: #666666">=100000</span>, random_state<span style="color: #666666">=42</span>)
scaler <span style="color: #666666">=</span> StandardScaler()
X_scaled <span style="color: #666666">=</span> scaler<span style="color: #666666">.</span>fit_transform(X)
lin_clf<span style="color: #666666">.</span>fit(X_scaled, y)
svm_clf<span style="color: #666666">.</span>fit(X_scaled, y)
sgd_clf<span style="color: #666666">.</span>fit(X_scaled, y)
<span style="color: #008000">print</span>(<span style="color: #BA2121">&quot;LinearSVC: &quot;</span>, lin_clf<span style="color: #666666">.</span>intercept_, lin_clf<span style="color: #666666">.</span>coef_)
<span style="color: #008000">print</span>(<span style="color: #BA2121">&quot;SVC: &quot;</span>, svm_clf<span style="color: #666666">.</span>intercept_, svm_clf<span style="color: #666666">.</span>coef_)
<span style="color: #008000">print</span>(<span style="color: #BA2121">&quot;SGDClassifier(alpha=</span><span style="color: #BB6688; font-weight: bold">{:.5f}</span><span style="color: #BA2121">):&quot;</span><span style="color: #666666">.</span>format(sgd_clf<span style="color: #666666">.</span>alpha), sgd_clf<span style="color: #666666">.</span>intercept_, sgd_clf<span style="color: #666666">.</span>coef_)
<span style="color: #408080; font-style: italic"># Compute the slope and bias of each decision boundary</span>
w1 <span style="color: #666666">=</span> <span style="color: #666666">-</span>lin_clf<span style="color: #666666">.</span>coef_[<span style="color: #666666">0</span>, <span style="color: #666666">0</span>]<span style="color: #666666">/</span>lin_clf<span style="color: #666666">.</span>coef_[<span style="color: #666666">0</span>, <span style="color: #666666">1</span>]
b1 <span style="color: #666666">=</span> <span style="color: #666666">-</span>lin_clf<span style="color: #666666">.</span>intercept_[<span style="color: #666666">0</span>]<span style="color: #666666">/</span>lin_clf<span style="color: #666666">.</span>coef_[<span style="color: #666666">0</span>, <span style="color: #666666">1</span>]
w2 <span style="color: #666666">=</span> <span style="color: #666666">-</span>svm_clf<span style="color: #666666">.</span>coef_[<span style="color: #666666">0</span>, <span style="color: #666666">0</span>]<span style="color: #666666">/</span>svm_clf<span style="color: #666666">.</span>coef_[<span style="color: #666666">0</span>, <span style="color: #666666">1</span>]
b2 <span style="color: #666666">=</span> <span style="color: #666666">-</span>svm_clf<span style="color: #666666">.</span>intercept_[<span style="color: #666666">0</span>]<span style="color: #666666">/</span>svm_clf<span style="color: #666666">.</span>coef_[<span style="color: #666666">0</span>, <span style="color: #666666">1</span>]
w3 <span style="color: #666666">=</span> <span style="color: #666666">-</span>sgd_clf<span style="color: #666666">.</span>coef_[<span style="color: #666666">0</span>, <span style="color: #666666">0</span>]<span style="color: #666666">/</span>sgd_clf<span style="color: #666666">.</span>coef_[<span style="color: #666666">0</span>, <span style="color: #666666">1</span>]
b3 <span style="color: #666666">=</span> <span style="color: #666666">-</span>sgd_clf<span style="color: #666666">.</span>intercept_[<span style="color: #666666">0</span>]<span style="color: #666666">/</span>sgd_clf<span style="color: #666666">.</span>coef_[<span style="color: #666666">0</span>, <span style="color: #666666">1</span>]
<span style="color: #408080; font-style: italic"># Transform the decision boundary lines back to the original scale</span>
line1 <span style="color: #666666">=</span> scaler<span style="color: #666666">.</span>inverse_transform([[<span style="color: #666666">-10</span>, <span style="color: #666666">-10</span> <span style="color: #666666">*</span> w1 <span style="color: #666666">+</span> b1], [<span style="color: #666666">10</span>, <span style="color: #666666">10</span> <span style="color: #666666">*</span> w1 <span style="color: #666666">+</span> b1]])
line2 <span style="color: #666666">=</span> scaler<span style="color: #666666">.</span>inverse_transform([[<span style="color: #666666">-10</span>, <span style="color: #666666">-10</span> <span style="color: #666666">*</span> w2 <span style="color: #666666">+</span> b2], [<span style="color: #666666">10</span>, <span style="color: #666666">10</span> <span style="color: #666666">*</span> w2 <span style="color: #666666">+</span> b2]])
line3 <span style="color: #666666">=</span> scaler<span style="color: #666666">.</span>inverse_transform([[<span style="color: #666666">-10</span>, <span style="color: #666666">-10</span> <span style="color: #666666">*</span> w3 <span style="color: #666666">+</span> b3], [<span style="color: #666666">10</span>, <span style="color: #666666">10</span> <span style="color: #666666">*</span> w3 <span style="color: #666666">+</span> b3]])
<span style="color: #408080; font-style: italic"># Plot all three decision boundaries</span>
plt<span style="color: #666666">.</span>figure(figsize<span style="color: #666666">=</span>(<span style="color: #666666">11</span>, <span style="color: #666666">4</span>))
plt<span style="color: #666666">.</span>plot(line1[:, <span style="color: #666666">0</span>], line1[:, <span style="color: #666666">1</span>], <span style="color: #BA2121">&quot;k:&quot;</span>, label<span style="color: #666666">=</span><span style="color: #BA2121">&quot;LinearSVC&quot;</span>)
plt<span style="color: #666666">.</span>plot(line2[:, <span style="color: #666666">0</span>], line2[:, <span style="color: #666666">1</span>], <span style="color: #BA2121">&quot;b--&quot;</span>, linewidth<span style="color: #666666">=2</span>, label<span style="color: #666666">=</span><span style="color: #BA2121">&quot;SVC&quot;</span>)
plt<span style="color: #666666">.</span>plot(line3[:, <span style="color: #666666">0</span>], line3[:, <span style="color: #666666">1</span>], <span style="color: #BA2121">&quot;r-&quot;</span>, label<span style="color: #666666">=</span><span style="color: #BA2121">&quot;SGDClassifier&quot;</span>)
plt<span style="color: #666666">.</span>plot(X[:, <span style="color: #666666">0</span>][y<span style="color: #666666">==1</span>], X[:, <span style="color: #666666">1</span>][y<span style="color: #666666">==1</span>], <span style="color: #BA2121">&quot;bs&quot;</span>) <span style="color: #408080; font-style: italic"># label=&quot;Iris-Versicolor&quot;</span>
plt<span style="color: #666666">.</span>plot(X[:, <span style="color: #666666">0</span>][y<span style="color: #666666">==0</span>], X[:, <span style="color: #666666">1</span>][y<span style="color: #666666">==0</span>], <span style="color: #BA2121">&quot;yo&quot;</span>) <span style="color: #408080; font-style: italic"># label=&quot;Iris-Setosa&quot;</span>
plt<span style="color: #666666">.</span>xlabel(<span style="color: #BA2121">&quot;Petal length&quot;</span>, fontsize<span style="color: #666666">=14</span>)
plt<span style="color: #666666">.</span>ylabel(<span style="color: #BA2121">&quot;Petal width&quot;</span>, fontsize<span style="color: #666666">=14</span>)
plt<span style="color: #666666">.</span>legend(loc<span style="color: #666666">=</span><span style="color: #BA2121">&quot;upper center&quot;</span>, fontsize<span style="color: #666666">=14</span>)
plt<span style="color: #666666">.</span>axis([<span style="color: #666666">0</span>, <span style="color: #666666">5.5</span>, <span style="color: #666666">0</span>, <span style="color: #666666">2</span>])
plt<span style="color: #666666">.</span>show()
</pre></div>
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