diff --git a/doc/pub/How2ReadData/html/How2ReadData-bs.html b/doc/pub/How2ReadData/html/How2ReadData-bs.html index 412777604..5ac65ab37 100644 --- a/doc/pub/How2ReadData/html/How2ReadData-bs.html +++ b/doc/pub/How2ReadData/html/How2ReadData-bs.html @@ -6,6 +6,7 @@ Automatically generated HTML file from DocOnce source + Data Analysis and Machine Learning: Getting started, our first data and Machine Learning encounters @@ -43,22 +44,23 @@ Automatically generated HTML file from DocOnce source 'sections': [('Introduction', 2, None, '___sec0'), ('Software and needed installations', 2, None, '___sec1'), ('Python installers', 2, None, '___sec2'), - ('Installing R, C++, cython or Julia', 2, None, '___sec3'), - ('Installing R, C++, cython, Numba etc', 2, None, '___sec4'), + ('Useful Python packages', 2, None, '___sec3'), + ('Installing R, C++, cython or Julia', 2, None, '___sec4'), + ('Installing R, C++, cython, Numba etc', 2, None, '___sec5'), ('Simple linear regression model using _scikit-learn_', 2, None, - '___sec5'), - ('Non-Linear Least squares in R', 2, None, '___sec6'), - ('Examples', 2, None, '___sec7'), - ('Ecoli lab experiment', 3, None, '___sec8'), - ('Predator-Prey model from ecology', 3, None, '___sec9'), - ('Simulating financial transactions', 3, None, '___sec10'), + '___sec6'), + ('Non-Linear Least squares in R', 2, None, '___sec7'), + ('Examples', 2, None, '___sec8'), + ('Ecoli lab experiment', 3, None, '___sec9'), + ('Predator-Prey model from ecology', 3, None, '___sec10'), + ('Simulating financial transactions', 3, None, '___sec11'), ('Particle in one dimension and velocity distribution', 3, None, - '___sec11'), - ('Random walk model', 3, None, '___sec12')]} + '___sec12'), + ('Random walk model', 3, None, '___sec13')]} end of tocinfo --> @@ -99,16 +101,17 @@ MathJax.Hub.Config({
  • Introduction
  • Software and needed installations
  • Python installers
    • -
  • Installing R, C++, cython or Julia
    • -
  • Installing R, C++, cython, Numba etc
    • -
  • Simple linear regression model using scikit-learn
    • -
  • Non-Linear Least squares in R
    • -
  • Examples
    • -
  •    Ecoli lab experiment
    • -
  •    Predator-Prey model from ecology
    • -
  •    Simulating financial transactions
    • -
  •    Particle in one dimension and velocity distribution
    • -
  •    Random walk model
    • +
  • Useful Python packages
    • +
  • Installing R, C++, cython or Julia
    • +
  • Installing R, C++, cython, Numba etc
    • +
  • Simple linear regression model using scikit-learn
    • +
  • Non-Linear Least squares in R
    • +
  • Examples
    • +
  •    Ecoli lab experiment
    • +
  •    Predator-Prey model from ecology
    • +
  •    Simulating financial transactions
    • +
  •    Particle in one dimension and velocity distribution
    • +
  •    Random walk model
    • @@ -142,7 +145,7 @@ MathJax.Hub.Config({
    [2] Department of Physics and Astronomy and National Superconducting Cyclotron Laboratory, Michigan State University

    -

    May 30, 2018

    +

    Jan 14, 2019


    @@ -256,7 +259,10 @@ distribution for scientific and analytic computing distribution and analysis environment, available for free and under a commercial license. -

    Installing R, C++, cython or Julia

    +

    Useful Python packages

    +Here we list several useful Python packages. + +

    Installing R, C++, cython or Julia

    You will also find it convenient to utilize R. Although we will mainly @@ -274,7 +280,7 @@ texts. To install R with Jupyter notebook follow the link here -

    Installing R, C++, cython, Numba etc

    +

    Installing R, C++, cython, Numba etc

    For the C++ aficionados, Jupyter/IPython notebook allows you also to @@ -308,7 +314,7 @@ Finally, if you wish to use the light mark-up language doconce you can convert a standard ascii text file into various HTML formats, ipython notebooks, latex files, pdf files etc with minimal edits. -

    Simple linear regression model using scikit-learn

    +

    Simple linear regression model using scikit-learn

    We start with perhaps our simplest possible example, using scikit-learn to perform linear regression analysis on a data set produced by us. @@ -596,7 +602,7 @@ plt.show() Similarly, using R, we can perform similar studies. The following R code illustrates this. (more details on R will be inserted later). -

    Non-Linear Least squares in R

    +

    Non-Linear Least squares in R

    @@ -647,7 +653,7 @@ data_pandas = pd

    -

    Examples

    +

    Examples

    We present here several examples, with pertinent Python codes that we @@ -664,7 +670,7 @@ Another model from the life sciences is the so-called predator-prey model from e a simple model for financial transactions before moving to a random walk model and ending with the simulation of velocities of a non-interacting atom or molecule confined to move in a one-dimensional region. -

    Ecoli lab experiment

    +

    Ecoli lab experiment

    A typical pattern seen in population models is that the population grows faster and faster. Why? Is there an underlying (general) mechanism? @@ -785,7 +791,7 @@ plt.show() We can then change the parameter \( r \) in the program and play around to make a better fit. By now we know that this 'search bythe eye' approach is not the most optimal one. -

    Predator-Prey model from ecology

    +

    Predator-Prey model from ecology

    The population dynamics of a simple predator-prey system is a @@ -1087,7 +1093,7 @@ confint(linearMod) predict(linearMod,data.frame(Year=c(1910,1914,1920)),interval="confidence")

    -

    Simulating financial transactions

    +

    Simulating financial transactions

    The aim here is to simulate financial transactions among financial agents @@ -1262,7 +1268,7 @@ $$ equilibrium distributions and compare these with the Gibbs distribution. We will use this model to extract a parametrization of the above curves, see for example Patriarca and collaborators. -

    Particle in one dimension and velocity distribution

    +

    Particle in one dimension and velocity distribution

    @@ -1312,7 +1318,7 @@ plt.grid(True.show() -

    Random walk model

    +

    Random walk model

    @@ -1423,7 +1429,7 @@ plt.show()

    - © 1999-2018, Morten Hjorth-Jensen. Released under CC Attribution-NonCommercial 4.0 license + © 1999-2019, Morten Hjorth-Jensen. Released under CC Attribution-NonCommercial 4.0 license
    diff --git a/doc/pub/How2ReadData/html/How2ReadData-reveal.html b/doc/pub/How2ReadData/html/How2ReadData-reveal.html index f6744726e..cce217bde 100644 --- a/doc/pub/How2ReadData/html/How2ReadData-reveal.html +++ b/doc/pub/How2ReadData/html/How2ReadData-reveal.html @@ -1,8 +1,8 @@ -\ + Data Analysis and Machine Learning: Getting started, our first data and Machine Learning encounters @@ -148,7 +148,7 @@ MathJax.Hub.Config({
    [2] Department of Physics and Astronomy and National Superconducting Cyclotron Laboratory, Michigan State University

     
    -

    May 30, 2018

    +

    Jan 14, 2019


    Introduction

    @@ -265,7 +265,10 @@ distribution for scientific and analytic computing distribution and analysis environment, available for free and under a commercial license. -

    Installing R, C++, cython or Julia

    +

    Useful Python packages

    +Here we list several useful Python packages. + +

    Installing R, C++, cython or Julia

    You will also find it convenient to utilize R. Although we will mainly @@ -283,7 +286,7 @@ texts. To install R with Jupyter notebook follow the link here -

    Installing R, C++, cython, Numba etc

    +

    Installing R, C++, cython, Numba etc

    For the C++ aficionados, Jupyter/IPython notebook allows you also to @@ -317,7 +320,7 @@ Finally, if you wish to use the light mark-up language doconce you can convert a standard ascii text file into various HTML formats, ipython notebooks, latex files, pdf files etc with minimal edits. -

    Simple linear regression model using scikit-learn

    +

    Simple linear regression model using scikit-learn

    We start with perhaps our simplest possible example, using scikit-learn to perform linear regression analysis on a data set produced by us. @@ -623,7 +626,7 @@ plt.show() Similarly, using R, we can perform similar studies. The following R code illustrates this. (more details on R will be inserted later). -

    Non-Linear Least squares in R

    +

    Non-Linear Least squares in R

    @@ -671,7 +674,7 @@ data_pandas = pd.DataFrame(data) display(data_pandas)

    -

    Examples

    +

    Examples

    We present here several examples, with pertinent Python codes that we @@ -688,7 +691,7 @@ Another model from the life sciences is the so-called predator-prey model from e a simple model for financial transactions before moving to a random walk model and ending with the simulation of velocities of a non-interacting atom or molecule confined to move in a one-dimensional region. -

    Ecoli lab experiment

    +

    Ecoli lab experiment

    A typical pattern seen in population models is that the population grows faster and faster. Why? Is there an underlying (general) mechanism? @@ -809,7 +812,7 @@ plt.show() We can then change the parameter \( r \) in the program and play around to make a better fit. By now we know that this 'search bythe eye' approach is not the most optimal one. -

    Predator-Prey model from ecology

    +

    Predator-Prey model from ecology

    The population dynamics of a simple predator-prey system is a @@ -1119,7 +1122,7 @@ confint(linearMod) predict(linearMod,data.frame(Year=c(1910,1914,1920)),interval="confidence") -

    Simulating financial transactions

    +

    Simulating financial transactions

    The aim here is to simulate financial transactions among financial agents @@ -1316,7 +1319,7 @@ $$ equilibrium distributions and compare these with the Gibbs distribution. We will use this model to extract a parametrization of the above curves, see for example Patriarca and collaborators. -

    Particle in one dimension and velocity distribution

    +

    Particle in one dimension and velocity distribution

    @@ -1366,7 +1369,7 @@ plt.grid(True) plt.show() -

    Random walk model

    +

    Random walk model

    @@ -1464,7 +1467,7 @@ plt.show()

    - © 1999-2018, Morten Hjorth-Jensen. Released under CC Attribution-NonCommercial 4.0 license + © 1999-2019, Morten Hjorth-Jensen. Released under CC Attribution-NonCommercial 4.0 license
    diff --git a/doc/pub/How2ReadData/html/How2ReadData-solarized.html b/doc/pub/How2ReadData/html/How2ReadData-solarized.html index b81301af6..3854aebc7 100644 --- a/doc/pub/How2ReadData/html/How2ReadData-solarized.html +++ b/doc/pub/How2ReadData/html/How2ReadData-solarized.html @@ -6,6 +6,7 @@ Automatically generated HTML file from DocOnce source + Data Analysis and Machine Learning: Getting started, our first data and Machine Learning encounters @@ -63,22 +64,23 @@ div { text-align: justify; text-justify: inter-word; } 'sections': [('Introduction', 2, None, '___sec0'), ('Software and needed installations', 2, None, '___sec1'), ('Python installers', 2, None, '___sec2'), - ('Installing R, C++, cython or Julia', 2, None, '___sec3'), - ('Installing R, C++, cython, Numba etc', 2, None, '___sec4'), + ('Useful Python packages', 2, None, '___sec3'), + ('Installing R, C++, cython or Julia', 2, None, '___sec4'), + ('Installing R, C++, cython, Numba etc', 2, None, '___sec5'), ('Simple linear regression model using _scikit-learn_', 2, None, - '___sec5'), - ('Non-Linear Least squares in R', 2, None, '___sec6'), - ('Examples', 2, None, '___sec7'), - ('Ecoli lab experiment', 3, None, '___sec8'), - ('Predator-Prey model from ecology', 3, None, '___sec9'), - ('Simulating financial transactions', 3, None, '___sec10'), + '___sec6'), + ('Non-Linear Least squares in R', 2, None, '___sec7'), + ('Examples', 2, None, '___sec8'), + ('Ecoli lab experiment', 3, None, '___sec9'), + ('Predator-Prey model from ecology', 3, None, '___sec10'), + ('Simulating financial transactions', 3, None, '___sec11'), ('Particle in one dimension and velocity distribution', 3, None, - '___sec11'), - ('Random walk model', 3, None, '___sec12')]} + '___sec12'), + ('Random walk model', 3, None, '___sec13')]} end of tocinfo --> @@ -120,7 +122,7 @@ MathJax.Hub.Config({
    [2] Department of Physics and Astronomy and National Superconducting Cyclotron Laboratory, Michigan State University

    -

    May 30, 2018

    +

    Jan 14, 2019


    Introduction

    @@ -232,7 +234,10 @@ distribution for scientific and analytic computing distribution and analysis environment, available for free and under a commercial license. -

    Installing R, C++, cython or Julia

    +

    Useful Python packages

    +Here we list several useful Python packages. + +

    Installing R, C++, cython or Julia

    You will also find it convenient to utilize R. Although we will mainly @@ -250,7 +255,7 @@ texts. To install R with Jupyter notebook follow the link here -

    Installing R, C++, cython, Numba etc

    +

    Installing R, C++, cython, Numba etc

    For the C++ aficionados, Jupyter/IPython notebook allows you also to @@ -284,7 +289,7 @@ Finally, if you wish to use the light mark-up language doconce you can convert a standard ascii text file into various HTML formats, ipython notebooks, latex files, pdf files etc with minimal edits. -

    Simple linear regression model using scikit-learn

    +

    Simple linear regression model using scikit-learn

    We start with perhaps our simplest possible example, using scikit-learn to perform linear regression analysis on a data set produced by us. @@ -572,7 +577,7 @@ plt.show() Similarly, using R, we can perform similar studies. The following R code illustrates this. (more details on R will be inserted later). -

    Non-Linear Least squares in R

    +

    Non-Linear Least squares in R

    @@ -622,7 +627,7 @@ data_pandas = pd.DataFrame(data) display(data_pandas)

    -

    Examples

    +

    Examples

    We present here several examples, with pertinent Python codes that we @@ -639,7 +644,7 @@ Another model from the life sciences is the so-called predator-prey model from e a simple model for financial transactions before moving to a random walk model and ending with the simulation of velocities of a non-interacting atom or molecule confined to move in a one-dimensional region. -

    Ecoli lab experiment

    +

    Ecoli lab experiment

    A typical pattern seen in population models is that the population grows faster and faster. Why? Is there an underlying (general) mechanism? @@ -759,7 +764,7 @@ plt.show() We can then change the parameter \( r \) in the program and play around to make a better fit. By now we know that this 'search bythe eye' approach is not the most optimal one. -

    Predator-Prey model from ecology

    +

    Predator-Prey model from ecology

    The population dynamics of a simple predator-prey system is a @@ -1055,7 +1060,7 @@ confint(linearMod) predict(linearMod,data.frame(Year=c(1910,1914,1920)),interval="confidence") -

    Simulating financial transactions

    +

    Simulating financial transactions

    The aim here is to simulate financial transactions among financial agents @@ -1230,7 +1235,7 @@ $$ equilibrium distributions and compare these with the Gibbs distribution. We will use this model to extract a parametrization of the above curves, see for example Patriarca and collaborators. -

    Particle in one dimension and velocity distribution

    +

    Particle in one dimension and velocity distribution

    @@ -1280,7 +1285,7 @@ plt.grid(True) plt.show() -

    Random walk model

    +

    Random walk model

    @@ -1380,7 +1385,7 @@ plt.show()

    - © 1999-2018, Morten Hjorth-Jensen. Released under CC Attribution-NonCommercial 4.0 license + © 1999-2019, Morten Hjorth-Jensen. Released under CC Attribution-NonCommercial 4.0 license
    diff --git a/doc/pub/How2ReadData/html/How2ReadData.html b/doc/pub/How2ReadData/html/How2ReadData.html index 28d565b93..ed3295b88 100644 --- a/doc/pub/How2ReadData/html/How2ReadData.html +++ b/doc/pub/How2ReadData/html/How2ReadData.html @@ -6,6 +6,7 @@ Automatically generated HTML file from DocOnce source + Data Analysis and Machine Learning: Getting started, our first data and Machine Learning encounters @@ -68,22 +69,23 @@ div { text-align: justify; text-justify: inter-word; } 'sections': [('Introduction', 2, None, '___sec0'), ('Software and needed installations', 2, None, '___sec1'), ('Python installers', 2, None, '___sec2'), - ('Installing R, C++, cython or Julia', 2, None, '___sec3'), - ('Installing R, C++, cython, Numba etc', 2, None, '___sec4'), + ('Useful Python packages', 2, None, '___sec3'), + ('Installing R, C++, cython or Julia', 2, None, '___sec4'), + ('Installing R, C++, cython, Numba etc', 2, None, '___sec5'), ('Simple linear regression model using _scikit-learn_', 2, None, - '___sec5'), - ('Non-Linear Least squares in R', 2, None, '___sec6'), - ('Examples', 2, None, '___sec7'), - ('Ecoli lab experiment', 3, None, '___sec8'), - ('Predator-Prey model from ecology', 3, None, '___sec9'), - ('Simulating financial transactions', 3, None, '___sec10'), + '___sec6'), + ('Non-Linear Least squares in R', 2, None, '___sec7'), + ('Examples', 2, None, '___sec8'), + ('Ecoli lab experiment', 3, None, '___sec9'), + ('Predator-Prey model from ecology', 3, None, '___sec10'), + ('Simulating financial transactions', 3, None, '___sec11'), ('Particle in one dimension and velocity distribution', 3, None, - '___sec11'), - ('Random walk model', 3, None, '___sec12')]} + '___sec12'), + ('Random walk model', 3, None, '___sec13')]} end of tocinfo --> @@ -125,7 +127,7 @@ MathJax.Hub.Config({
    [2] Department of Physics and Astronomy and National Superconducting Cyclotron Laboratory, Michigan State University

    -

    May 30, 2018

    +

    Jan 14, 2019


    Introduction

    @@ -237,7 +239,10 @@ distribution for scientific and analytic computing distribution and analysis environment, available for free and under a commercial license. -

    Installing R, C++, cython or Julia

    +

    Useful Python packages

    +Here we list several useful Python packages. + +

    Installing R, C++, cython or Julia

    You will also find it convenient to utilize R. Although we will mainly @@ -255,7 +260,7 @@ texts. To install R with Jupyter notebook follow the link here -

    Installing R, C++, cython, Numba etc

    +

    Installing R, C++, cython, Numba etc

    For the C++ aficionados, Jupyter/IPython notebook allows you also to @@ -289,7 +294,7 @@ Finally, if you wish to use the light mark-up language doconce you can convert a standard ascii text file into various HTML formats, ipython notebooks, latex files, pdf files etc with minimal edits. -

    Simple linear regression model using scikit-learn

    +

    Simple linear regression model using scikit-learn

    We start with perhaps our simplest possible example, using scikit-learn to perform linear regression analysis on a data set produced by us. @@ -577,7 +582,7 @@ plt.show() Similarly, using R, we can perform similar studies. The following R code illustrates this. (more details on R will be inserted later). -

    Non-Linear Least squares in R

    +

    Non-Linear Least squares in R

    @@ -627,7 +632,7 @@ data_pandas = pd

    -

    Examples

    +

    Examples

    We present here several examples, with pertinent Python codes that we @@ -644,7 +649,7 @@ Another model from the life sciences is the so-called predator-prey model from e a simple model for financial transactions before moving to a random walk model and ending with the simulation of velocities of a non-interacting atom or molecule confined to move in a one-dimensional region. -

    Ecoli lab experiment

    +

    Ecoli lab experiment

    A typical pattern seen in population models is that the population grows faster and faster. Why? Is there an underlying (general) mechanism? @@ -764,7 +769,7 @@ plt.show() We can then change the parameter \( r \) in the program and play around to make a better fit. By now we know that this 'search bythe eye' approach is not the most optimal one. -

    Predator-Prey model from ecology

    +

    Predator-Prey model from ecology

    The population dynamics of a simple predator-prey system is a @@ -1060,7 +1065,7 @@ confint(linearMod) predict(linearMod,data.frame(Year=c(1910,1914,1920)),interval="confidence") -

    Simulating financial transactions

    +

    Simulating financial transactions

    The aim here is to simulate financial transactions among financial agents @@ -1235,7 +1240,7 @@ $$ equilibrium distributions and compare these with the Gibbs distribution. We will use this model to extract a parametrization of the above curves, see for example Patriarca and collaborators. -

    Particle in one dimension and velocity distribution

    +

    Particle in one dimension and velocity distribution

    @@ -1285,7 +1290,7 @@ plt.grid(True.show() -

    Random walk model

    +

    Random walk model

    @@ -1385,7 +1390,7 @@ plt.show()

    - © 1999-2018, Morten Hjorth-Jensen. Released under CC Attribution-NonCommercial 4.0 license + © 1999-2019, Morten Hjorth-Jensen. Released under CC Attribution-NonCommercial 4.0 license
    diff --git a/doc/pub/How2ReadData/html/reveal.js/.gitignore b/doc/pub/How2ReadData/html/reveal.js/.gitignore index e7b4f216a..a5df3133d 100644 --- a/doc/pub/How2ReadData/html/reveal.js/.gitignore +++ b/doc/pub/How2ReadData/html/reveal.js/.gitignore @@ -1,8 +1,3 @@ -.idea/ -*.iml -*.iws -*.eml -out/ .DS_Store .svn log/*.log @@ -10,4 +5,4 @@ tmp/** node_modules/ .sass-cache css/reveal.min.css -js/reveal.min.js \ No newline at end of file +js/reveal.min.js diff --git a/doc/pub/How2ReadData/html/reveal.js/.travis.yml b/doc/pub/How2ReadData/html/reveal.js/.travis.yml index ec3b27d5d..165d9ae9f 100644 --- a/doc/pub/How2ReadData/html/reveal.js/.travis.yml +++ b/doc/pub/How2ReadData/html/reveal.js/.travis.yml @@ -1,7 +1,5 @@ language: node_js node_js: - - 4 + - 0.10 before_script: - - npm install -g grunt-cli -after_script: - - grunt retire + - npm install -g grunt-cli \ No newline at end of file diff --git a/doc/pub/How2ReadData/html/reveal.js/LICENSE b/doc/pub/How2ReadData/html/reveal.js/LICENSE index c3e6e5fd6..09623076f 100644 --- a/doc/pub/How2ReadData/html/reveal.js/LICENSE +++ b/doc/pub/How2ReadData/html/reveal.js/LICENSE @@ -1,4 +1,4 @@ -Copyright (C) 2017 Hakim El Hattab, http://hakim.se, and reveal.js contributors +Copyright (C) 2015 Hakim El Hattab, http://hakim.se Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal diff --git a/doc/pub/How2ReadData/html/reveal.js/README.md b/doc/pub/How2ReadData/html/reveal.js/README.md index f2ab6ca88..573b19597 100644 --- a/doc/pub/How2ReadData/html/reveal.js/README.md +++ b/doc/pub/How2ReadData/html/reveal.js/README.md @@ -1,58 +1,12 @@ -# reveal.js [![Build Status](https://travis-ci.org/hakimel/reveal.js.svg?branch=master)](https://travis-ci.org/hakimel/reveal.js) Slides +# reveal.js [![Build Status](https://travis-ci.org/hakimel/reveal.js.svg?branch=master)](https://travis-ci.org/hakimel/reveal.js) -A framework for easily creating beautiful presentations using HTML. [Check out the live demo](http://revealjs.com/). +A framework for easily creating beautiful presentations using HTML. [Check out the live demo](http://lab.hakim.se/reveal-js/). -reveal.js comes with a broad range of features including [nested slides](https://github.com/hakimel/reveal.js#markup), [Markdown contents](https://github.com/hakimel/reveal.js#markdown), [PDF export](https://github.com/hakimel/reveal.js#pdf-export), [speaker notes](https://github.com/hakimel/reveal.js#speaker-notes) and a [JavaScript API](https://github.com/hakimel/reveal.js#api). There's also a fully featured visual editor and platform for sharing reveal.js presentations at [slides.com](https://slides.com?ref=github). +reveal.js comes with a broad range of features including [nested slides](https://github.com/hakimel/reveal.js#markup), [Markdown contents](https://github.com/hakimel/reveal.js#markdown), [PDF export](https://github.com/hakimel/reveal.js#pdf-export), [speaker notes](https://github.com/hakimel/reveal.js#speaker-notes) and a [JavaScript API](https://github.com/hakimel/reveal.js#api). It's best viewed in a modern browser but [fallbacks](https://github.com/hakimel/reveal.js/wiki/Browser-Support) are available to make sure your presentation can still be viewed elsewhere. -## Table of contents -- [Online Editor](#online-editor) -- [Instructions](#instructions) - - [Markup](#markup) - - [Markdown](#markdown) - - [Element Attributes](#element-attributes) - - [Slide Attributes](#slide-attributes) -- [Configuration](#configuration) -- [Presentation Size](#presentation-size) -- [Dependencies](#dependencies) -- [Ready Event](#ready-event) -- [Auto-sliding](#auto-sliding) -- [Keyboard Bindings](#keyboard-bindings) -- [Touch Navigation](#touch-navigation) -- [Lazy Loading](#lazy-loading) -- [API](#api) - - [Slide Changed Event](#slide-changed-event) - - [Presentation State](#presentation-state) - - [Slide States](#slide-states) - - [Slide Backgrounds](#slide-backgrounds) - - [Parallax Background](#parallax-background) - - [Slide Transitions](#slide-transitions) - - [Internal links](#internal-links) - - [Fragments](#fragments) - - [Fragment events](#fragment-events) - - [Code syntax highlighting](#code-syntax-highlighting) - - [Slide number](#slide-number) - - [Overview mode](#overview-mode) - - [Fullscreen mode](#fullscreen-mode) - - [Embedded media](#embedded-media) - - [Stretching elements](#stretching-elements) - - [postMessage API](#postmessage-api) -- [PDF Export](#pdf-export) -- [Theming](#theming) -- [Speaker Notes](#speaker-notes) - - [Share and Print Speaker Notes](#share-and-print-speaker-notes) - - [Server Side Speaker Notes](#server-side-speaker-notes) -- [Multiplexing](#multiplexing) - - [Master presentation](#master-presentation) - - [Client presentation](#client-presentation) - - [Socket.io server](#socketio-server) -- [MathJax](#mathjax) -- [Installation](#installation) - - [Basic setup](#basic-setup) - - [Full setup](#full-setup) - - [Folder Structure](#folder-structure) -- [License](#license) -#### More reading +#### More reading: +- [Installation](#installation): Step-by-step instructions for getting reveal.js running on your computer. - [Changelog](https://github.com/hakimel/reveal.js/releases): Up-to-date version history. - [Examples](https://github.com/hakimel/reveal.js/wiki/Example-Presentations): Presentations created with reveal.js, add your own! - [Browser Support](https://github.com/hakimel/reveal.js/wiki/Browser-Support): Explanation of browser support and fallbacks. @@ -60,36 +14,14 @@ reveal.js comes with a broad range of features including [nested slides](https:/ ## Online Editor -Presentations are written using HTML or Markdown but there's also an online editor for those of you who prefer a graphical interface. Give it a try at [https://slides.com](https://slides.com?ref=github). +Presentations are written using HTML or Markdown but there's also an online editor for those of you who prefer a graphical interface. Give it a try at [http://slides.com](http://slides.com). ## Instructions ### Markup -Here's a barebones example of a fully working reveal.js presentation: -```html - - - - - - -
    -
    -
    Slide 1
    -
    Slide 2
    -
    -
    - - - - -``` - -The presentation markup hierarchy needs to be `.reveal > .slides > section` where the `section` represents one slide and can be repeated indefinitely. If you place multiple `section` elements inside of another `section` they will be shown as vertical slides. The first of the vertical slides is the "root" of the others (at the top), and will be included in the horizontal sequence. For example: +Markup hierarchy needs to be ``
    `` where the ``
    `` represents one slide and can be repeated indefinitely. If you place multiple ``
    ``'s inside of another ``
    `` they will be shown as vertical slides. The first of the vertical slides is the "root" of the others (at the top), and it will be included in the horizontal sequence. For example: ```html
    @@ -105,36 +37,32 @@ The presentation markup hierarchy needs to be `.reveal > .slides > section` wher ### Markdown -It's possible to write your slides using Markdown. To enable Markdown, add the `data-markdown` attribute to your `
    ` elements and wrap the contents in a ` +
    ``` #### External Markdown -You can write your content as a separate file and have reveal.js load it at runtime. Note the separator arguments which determine how slides are delimited in the external file: the `data-separator` attribute defines a regular expression for horizontal slides (defaults to `^\r?\n---\r?\n$`, a newline-bounded horizontal rule) and `data-separator-vertical` defines vertical slides (disabled by default). The `data-separator-notes` attribute is a regular expression for specifying the beginning of the current slide's speaker notes (defaults to `note:`). The `data-charset` attribute is optional and specifies which charset to use when loading the external file. +You can write your content as a separate file and have reveal.js load it at runtime. Note the separator arguments which determine how slides are delimited in the external file. The ```data-charset``` attribute is optional and specifies which charset to use when loading the external file. -When used locally, this feature requires that reveal.js [runs from a local web server](#full-setup). The following example customises all available options: +When used locally, this feature requires that reveal.js [runs from a local web server](#full-setup). ```html -
    -
    ``` @@ -164,19 +92,6 @@ Special syntax (in html comment) is available for adding attributes to the slide
    ``` -#### Configuring *marked* - -We use [marked](https://github.com/chjj/marked) to parse Markdown. To customise marked's rendering, you can pass in options when [configuring Reveal](#configuration): - -```javascript -Reveal.initialize({ - // Options which are passed into marked - // See https://github.com/chjj/marked#options-1 - markdown: { - smartypants: true - } -}); -``` ### Configuration @@ -185,26 +100,12 @@ At the end of your page you need to initialize reveal by running the following c ```javascript Reveal.initialize({ - // Display presentation control arrows + // Display controls in the bottom right corner controls: true, - // Help the user learn the controls by providing hints, for example by - // bouncing the down arrow when they first encounter a vertical slide - controlsTutorial: true, - - // Determines where controls appear, "edges" or "bottom-right" - controlsLayout: 'bottom-right', - - // Visibility rule for backwards navigation arrows; "faded", "hidden" - // or "visible" - controlsBackArrows: 'faded', - // Display a presentation progress bar progress: true, - // Set default timing of 2 minutes per slide - defaultTiming: 120, - // Display the page number of the current slide slideNumber: false, @@ -229,9 +130,6 @@ Reveal.initialize({ // Change the presentation direction to be RTL rtl: false, - // Randomizes the order of slides each time the presentation loads - shuffle: false, - // Turns fragments on and off globally fragments: true, @@ -243,15 +141,6 @@ Reveal.initialize({ // key is pressed help: true, - // Flags if speaker notes should be visible to all viewers - showNotes: false, - - // Global override for autoplaying embedded media (video/audio/iframe) - // - null: Media will only autoplay if data-autoplay is present - // - true: All media will autoplay, regardless of individual setting - // - false: No media will autoplay, regardless of individual setting - autoPlayMedia: null, - // Number of milliseconds between automatically proceeding to the // next slide, disabled when set to 0, this value can be overwritten // by using a data-autoslide attribute on your slides @@ -260,9 +149,6 @@ Reveal.initialize({ // Stop auto-sliding after user input autoSlideStoppable: true, - // Use this method for navigation when auto-sliding - autoSlideMethod: Reveal.navigateNext, - // Enable slide navigation via mouse wheel mouseWheel: false, @@ -270,18 +156,16 @@ Reveal.initialize({ hideAddressBar: true, // Opens links in an iframe preview overlay - // Add `data-preview-link` and `data-preview-link="false"` to customise each link - // individually previewLinks: false, // Transition style - transition: 'slide', // none/fade/slide/convex/concave/zoom + transition: 'default', // none/fade/slide/convex/concave/zoom // Transition speed transitionSpeed: 'default', // default/fast/slow // Transition style for full page slide backgrounds - backgroundTransition: 'fade', // none/fade/slide/convex/concave/zoom + backgroundTransition: 'default', // none/fade/slide/convex/concave/zoom // Number of slides away from the current that are visible viewDistance: 3, @@ -292,14 +176,10 @@ Reveal.initialize({ // Parallax background size parallaxBackgroundSize: '', // CSS syntax, e.g. "2100px 900px" - // Number of pixels to move the parallax background per slide - // - Calculated automatically unless specified - // - Set to 0 to disable movement along an axis - parallaxBackgroundHorizontal: null, - parallaxBackgroundVertical: null, - - // The display mode that will be used to show slides - display: 'block' + // Amount to move parallax background (horizontal and vertical) on slide change + // Number, e.g. 100 + parallaxBackgroundHorizontal: '', + parallaxBackgroundVertical: '' }); ``` @@ -316,6 +196,56 @@ Reveal.configure({ autoSlide: 5000 }); ``` +### Dependencies + +Reveal.js doesn't _rely_ on any third party scripts to work but a few optional libraries are included by default. These libraries are loaded as dependencies in the order they appear, for example: + +```javascript +Reveal.initialize({ + dependencies: [ + // Cross-browser shim that fully implements classList - https://github.com/eligrey/classList.js/ + { src: 'lib/js/classList.js', condition: function() { return !document.body.classList; } }, + + // Interpret Markdown in
    elements + { src: 'plugin/markdown/marked.js', condition: function() { return !!document.querySelector( '[data-markdown]' ); } }, + { src: 'plugin/markdown/markdown.js', condition: function() { return !!document.querySelector( '[data-markdown]' ); } }, + + // Syntax highlight for elements + { src: 'plugin/highlight/highlight.js', async: true, callback: function() { hljs.initHighlightingOnLoad(); } }, + + // Zoom in and out with Alt+click + { src: 'plugin/zoom-js/zoom.js', async: true }, + + // Speaker notes + { src: 'plugin/notes/notes.js', async: true }, + + // Remote control your reveal.js presentation using a touch device + { src: 'plugin/remotes/remotes.js', async: true }, + + // MathJax + { src: 'plugin/math/math.js', async: true } + ] +}); +``` + +You can add your own extensions using the same syntax. The following properties are available for each dependency object: +- **src**: Path to the script to load +- **async**: [optional] Flags if the script should load after reveal.js has started, defaults to false +- **callback**: [optional] Function to execute when the script has loaded +- **condition**: [optional] Function which must return true for the script to be loaded + + +### Ready Event + +A 'ready' event is fired when reveal.js has loaded all non-async dependencies and is ready to start navigating. To check if reveal.js is already 'ready' you can call `Reveal.isReady()`. + +```javascript +Reveal.addEventListener( 'ready', function( event ) { + // event.currentSlide, event.indexh, event.indexv +} ); +``` + + ### Presentation Size All presentations have a normal size, that is the resolution at which they are authored. The framework will automatically scale presentations uniformly based on this size to ensure that everything fits on any given display or viewport. @@ -343,69 +273,6 @@ Reveal.initialize({ }); ``` -If you wish to disable this behavior and do your own scaling (e.g. using media queries), try these settings: - -```javascript -Reveal.initialize({ - - ... - - width: "100%", - height: "100%", - margin: 0, - minScale: 1, - maxScale: 1 -}); -``` - -### Dependencies - -Reveal.js doesn't _rely_ on any third party scripts to work but a few optional libraries are included by default. These libraries are loaded as dependencies in the order they appear, for example: - -```javascript -Reveal.initialize({ - dependencies: [ - // Cross-browser shim that fully implements classList - https://github.com/eligrey/classList.js/ - { src: 'lib/js/classList.js', condition: function() { return !document.body.classList; } }, - - // Interpret Markdown in
    elements - { src: 'plugin/markdown/marked.js', condition: function() { return !!document.querySelector( '[data-markdown]' ); } }, - { src: 'plugin/markdown/markdown.js', condition: function() { return !!document.querySelector( '[data-markdown]' ); } }, - - // Syntax highlight for elements - { src: 'plugin/highlight/highlight.js', async: true, callback: function() { hljs.initHighlightingOnLoad(); } }, - - // Zoom in and out with Alt+click - { src: 'plugin/zoom-js/zoom.js', async: true }, - - // Speaker notes - { src: 'plugin/notes/notes.js', async: true }, - - // MathJax - { src: 'plugin/math/math.js', async: true } - ] -}); -``` - -You can add your own extensions using the same syntax. The following properties are available for each dependency object: -- **src**: Path to the script to load -- **async**: [optional] Flags if the script should load after reveal.js has started, defaults to false -- **callback**: [optional] Function to execute when the script has loaded -- **condition**: [optional] Function which must return true for the script to be loaded - -To load these dependencies, reveal.js requires [head.js](http://headjs.com/) *(a script loading library)* to be loaded before reveal.js. - -### Ready Event - -A 'ready' event is fired when reveal.js has loaded all non-async dependencies and is ready to start navigating. To check if reveal.js is already 'ready' you can call `Reveal.isReady()`. - -```javascript -Reveal.addEventListener( 'ready', function( event ) { - // event.currentSlide, event.indexh, event.indexv -} ); -``` - -Note that we also add a `.ready` class to the `.reveal` element so that you can hook into this with CSS. ### Auto-sliding @@ -429,8 +296,6 @@ You can also override the slide duration for individual slides and fragments by
    ``` -To override the method used for navigation when auto-sliding, you can specify the ```autoSlideMethod``` setting. To only navigate along the top layer and ignore vertical slides, set this to ```Reveal.navigateRight```. - Whenever the auto-slide mode is resumed or paused the ```autoslideresumed``` and ```autoslidepaused``` events are fired. @@ -448,13 +313,6 @@ Reveal.configure({ }); ``` -### Touch Navigation - -You can swipe to navigate through a presentation on any touch-enabled device. Horizontal swipes change between horizontal slides, vertical swipes change between vertical slides. If you wish to disable this you can set the `touch` config option to false when initializing reveal.js. - -If there's some part of your content that needs to remain accessible to touch events you'll need to highlight this by adding a `data-prevent-swipe` attribute to the element. One common example where this is useful is elements that need to be scrolled. - - ### Lazy Loading When working on presentation with a lot of media or iframe content it's important to load lazily. Lazy loading means that reveal.js will only load content for the few slides nearest to the current slide. The number of slides that are preloaded is determined by the `viewDistance` configuration option. @@ -489,18 +347,11 @@ Reveal.next(); Reveal.prevFragment(); Reveal.nextFragment(); -// Randomize the order of slides -Reveal.shuffle(); - // Toggle presentation states, optionally pass true/false to force on/off Reveal.toggleOverview(); Reveal.togglePause(); Reveal.toggleAutoSlide(); -// Shows a help overlay with keyboard shortcuts, optionally pass true/false -// to force on/off -Reveal.toggleHelp(); - // Change a config value at runtime Reveal.configure({ controls: true }); @@ -514,14 +365,9 @@ Reveal.getScale(); Reveal.getPreviousSlide(); Reveal.getCurrentSlide(); -Reveal.getIndices(); // { h: 0, v: 0 } } -Reveal.getPastSlideCount(); -Reveal.getProgress(); // (0 == first slide, 1 == last slide) -Reveal.getSlides(); // Array of all slides -Reveal.getTotalSlides(); // total number of slides - -// Returns the speaker notes for the current slide -Reveal.getSlideNotes(); +Reveal.getIndices(); // { h: 0, v: 0 } } +Reveal.getProgress(); // 0-1 +Reveal.getTotalSlides(); // State checks Reveal.isFirstSlide(); @@ -574,59 +420,26 @@ Reveal.addEventListener( 'somestate', function() { ### Slide Backgrounds -Slides are contained within a limited portion of the screen by default to allow them to fit any display and scale uniformly. You can apply full page backgrounds outside of the slide area by adding a ```data-background``` attribute to your ```
    ``` elements. Four different types of backgrounds are supported: color, image, video and iframe. +Slides are contained within a limited portion of the screen by default to allow them to fit any display and scale uniformly. You can apply full page backgrounds outside of the slide area by adding a ```data-background``` attribute to your ```
    ``` elements. Four different types of backgrounds are supported: color, image, video and iframe. Below are a few examples. -#### Color Backgrounds -All CSS color formats are supported, like rgba() or hsl(). ```html -
    -

    Color

    +
    +

    All CSS color formats are supported, like rgba() or hsl().

    +
    +
    +

    This slide will have a full-size background image.

    +
    +
    +

    This background image will be sized to 100px and repeated.

    +
    +
    +

    Video. Multiple sources can be defined using a comma separated list. Video will loop when the data-background-video-loop attribute is provided.

    +
    +
    +

    Embeds a web page as a background. Note that the page won't be interactive.

    ``` -#### Image Backgrounds -By default, background images are resized to cover the full page. Available options: - -| Attribute | Default | Description | -| :--------------------------- | :--------- | :---------- | -| data-background-image | | URL of the image to show. GIFs restart when the slide opens. | -| data-background-size | cover | See [background-size](https://developer.mozilla.org/docs/Web/CSS/background-size) on MDN. | -| data-background-position | center | See [background-position](https://developer.mozilla.org/docs/Web/CSS/background-position) on MDN. | -| data-background-repeat | no-repeat | See [background-repeat](https://developer.mozilla.org/docs/Web/CSS/background-repeat) on MDN. | -```html -
    -

    Image

    -
    -
    -

    This background image will be sized to 100px and repeated

    -
    -``` - -#### Video Backgrounds -Automatically plays a full size video behind the slide. - -| Attribute | Default | Description | -| :--------------------------- | :------ | :---------- | -| data-background-video | | A single video source, or a comma separated list of video sources. | -| data-background-video-loop | false | Flags if the video should play repeatedly. | -| data-background-video-muted | false | Flags if the audio should be muted. | -| data-background-size | cover | Use `cover` for full screen and some cropping or `contain` for letterboxing. | - -```html -
    -

    Video

    -
    -``` - -#### Iframe Backgrounds -Embeds a web page as a slide background that covers 100% of the reveal.js width and height. The iframe is in the background layer, behind your slides, and as such it's not possible to interact with it by default. To make your background interactive, you can add the `data-background-interactive` attribute. -```html -
    -

    Iframe

    -
    -``` - -#### Background Transitions Backgrounds transition using a fade animation by default. This can be changed to a linear sliding transition by passing ```backgroundTransition: 'slide'``` to the ```Reveal.initialize()``` call. Alternatively you can set ```data-background-transition``` on any section with a background to override that specific transition. @@ -643,16 +456,16 @@ Reveal.initialize({ // Parallax background size parallaxBackgroundSize: '', // CSS syntax, e.g. "2100px 900px" - currently only pixels are supported (don't use % or auto) - // Number of pixels to move the parallax background per slide - // - Calculated automatically unless specified - // - Set to 0 to disable movement along an axis + // Amount of pixels to move the parallax background per slide step, + // a value of 0 disables movement along the given axis + // These are optional, if they aren't specified they'll be calculated automatically parallaxBackgroundHorizontal: 200, parallaxBackgroundVertical: 50 }); ``` -Make sure that the background size is much bigger than screen size to allow for some scrolling. [View example](http://revealjs.com/?parallaxBackgroundImage=https%3A%2F%2Fs3.amazonaws.com%2Fhakim-static%2Freveal-js%2Freveal-parallax-1.jpg¶llaxBackgroundSize=2100px%20900px). +Make sure that the background size is much bigger than screen size to allow for some scrolling. [View example](http://lab.hakim.se/reveal-js/?parallaxBackgroundImage=https%3A%2F%2Fs3.amazonaws.com%2Fhakim-static%2Freveal-js%2Freveal-parallax-1.jpg¶llaxBackgroundSize=2100px%20900px). @@ -673,15 +486,15 @@ You can also use different in and out transitions for the same slide: ```html
    - The train goes on … + The train goes on …
    -
    - and on … +
    + and on …
    -
    +
    and stops.
    -
    +
    (Passengers entering and leaving)
    @@ -690,6 +503,9 @@ You can also use different in and out transitions for the same slide: ``` +Note that this does not work with the page and cube transitions. + + ### Internal links It's easy to link between slides. The first example below targets the index of another slide whereas the second targets a slide with an ID attribute (```
    ```): @@ -712,7 +528,7 @@ You can also add relative navigation links, similar to the built in reveal.js co ### Fragments -Fragments are used to highlight individual elements on a slide. Every element with the class ```fragment``` will be stepped through before moving on to the next slide. Here's an example: http://revealjs.com/#/fragments +Fragments are used to highlight individual elements on a slide. Every element with the class ```fragment``` will be stepped through before moving on to the next slide. Here's an example: http://lab.hakim.se/reveal-js/#/fragments The default fragment style is to start out invisible and fade in. This style can be changed by appending a different class to the fragment: @@ -721,7 +537,6 @@ The default fragment style is to start out invisible and fade in. This style can

    grow

    shrink

    fade-out

    -

    fade-up (also down, left and right!)

    visible only once

    blue only once

    highlight-red

    @@ -767,41 +582,33 @@ Reveal.addEventListener( 'fragmenthidden', function( event ) { ### Code syntax highlighting -By default, Reveal is configured with [highlight.js](https://highlightjs.org/) for code syntax highlighting. To enable syntax highlighting, you'll have to load the highlight plugin ([plugin/highlight/highlight.js](plugin/highlight/highlight.js)) and a highlight.js CSS theme (Reveal comes packaged with the zenburn theme: [lib/css/zenburn.css](lib/css/zenburn.css)). - -Below is an example with clojure code that will be syntax highlighted. When the `data-trim` attribute is present, surrounding whitespace is automatically removed. HTML will be escaped by default. To avoid this, for example if you are using `` to call out a line of code, add the `data-noescape` attribute to the `` element. +By default, Reveal is configured with [highlight.js](http://softwaremaniacs.org/soft/highlight/en/) for code syntax highlighting. Below is an example with clojure code that will be syntax highlighted. When the `data-trim` attribute is present surrounding whitespace is automatically removed. ```html
    - 
    
+	
    
 (def lazy-fib
   (concat
    [0 1]
-   ((fn rfib [a b]
+   ((fn rfib [a b]
         (lazy-cons (+ a b) (rfib b (+ a b)))) 0 1)))
    ``` ### Slide number -If you would like to display the page number of the current slide you can do so using the ```slideNumber``` and ```showSlideNumber``` configuration values. +If you would like to display the page number of the current slide you can do so using the ```slideNumber``` configuration value. ```javascript // Shows the slide number using default formatting Reveal.configure({ slideNumber: true }); // Slide number formatting can be configured using these variables: -// "h.v": horizontal . vertical slide number (default) -// "h/v": horizontal / vertical slide number -// "c": flattened slide number -// "c/t": flattened slide number / total slides -Reveal.configure({ slideNumber: 'c/t' }); - -// Control which views the slide number displays on using the "showSlideNumber" value: -// "all": show on all views (default) -// "speaker": only show slide numbers on speaker notes view -// "print": only show slide numbers when printing to PDF -Reveal.configure({ showSlideNumber: 'speaker' }); +// h: current slide's horizontal index +// v: current slide's vertical index +// c: current slide index (flattened) +// t: total number of slides (flattened) +Reveal.configure({ slideNumber: 'c / t' }); ``` @@ -819,26 +626,20 @@ Reveal.addEventListener( 'overviewhidden', function( event ) { /* ... */ } ); Reveal.toggleOverview(); ``` - ### Fullscreen mode Just press »F« on your keyboard to show your presentation in fullscreen mode. Press the »ESC« key to exit fullscreen mode. ### Embedded media +Embedded HTML5 `
    diff --git a/doc/pub/How2ReadData/html/reveal.js/plugin/markdown/example.md b/doc/pub/How2ReadData/html/reveal.js/plugin/markdown/example.md index 89c75345e..6f6f577a1 100644 --- a/doc/pub/How2ReadData/html/reveal.js/plugin/markdown/example.md +++ b/doc/pub/How2ReadData/html/reveal.js/plugin/markdown/example.md @@ -29,8 +29,3 @@ Content 3.1 ## External 3.2 Content 3.2 - - -## External 3.3 - -![External Image](https://s3.amazonaws.com/static.slid.es/logo/v2/slides-symbol-512x512.png) diff --git a/doc/pub/How2ReadData/html/reveal.js/plugin/markdown/markdown.js b/doc/pub/How2ReadData/html/reveal.js/plugin/markdown/markdown.js index aa08ee5ed..15e3b40b3 100644 --- a/doc/pub/How2ReadData/html/reveal.js/plugin/markdown/markdown.js +++ b/doc/pub/How2ReadData/html/reveal.js/plugin/markdown/markdown.js @@ -4,26 +4,33 @@ * of external markdown documents. */ (function( root, factory ) { - if (typeof define === 'function' && define.amd) { - root.marked = require( './marked' ); - root.RevealMarkdown = factory( root.marked ); - root.RevealMarkdown.initialize(); - } else if( typeof exports === 'object' ) { + if( typeof exports === 'object' ) { module.exports = factory( require( './marked' ) ); - } else { + } + else { // Browser globals (root is window) root.RevealMarkdown = factory( root.marked ); root.RevealMarkdown.initialize(); } }( this, function( marked ) { + if( typeof marked === 'undefined' ) { + throw 'The reveal.js Markdown plugin requires marked to be loaded'; + } + + if( typeof hljs !== 'undefined' ) { + marked.setOptions({ + highlight: function( lang, code ) { + return hljs.highlightAuto( lang, code ).value; + } + }); + } + var DEFAULT_SLIDE_SEPARATOR = '^\r?\n---\r?\n$', - DEFAULT_NOTES_SEPARATOR = 'notes?:', + DEFAULT_NOTES_SEPARATOR = 'note:', DEFAULT_ELEMENT_ATTRIBUTES_SEPARATOR = '\\\.element\\\s*?(.+?)$', DEFAULT_SLIDE_ATTRIBUTES_SEPARATOR = '\\\.slide:\\\s*?(\\\S.+?)$'; - var SCRIPT_END_PLACEHOLDER = '__SCRIPT_END__'; - /** * Retrieves the markdown contents of a slide section @@ -31,15 +38,11 @@ */ function getMarkdownFromSlide( section ) { - // look for a ' ); - var leadingWs = text.match( /^\n?(\s*)/ )[1].length, leadingTabs = text.match( /^\n?(\t*)/ )[1].length; @@ -109,13 +112,9 @@ var notesMatch = content.split( new RegExp( options.notesSeparator, 'mgi' ) ); if( notesMatch.length === 2 ) { - content = notesMatch[0] + ''; + content = notesMatch[0] + ''; } - // prevent script end tags in the content from interfering - // with parsing - content = content.replace( /<\/script>/g, SCRIPT_END_PLACEHOLDER ); - return ''; } @@ -178,7 +177,7 @@ markdownSections += '
    '; sectionStack[i].forEach( function( child ) { - markdownSections += '
    ' + createMarkdownSlide( child, options ) + '
    '; + markdownSections += '
    ' + createMarkdownSlide( child, options ) + '
    '; } ); markdownSections += '
    '; @@ -380,24 +379,6 @@ return { initialize: function() { - if( typeof marked === 'undefined' ) { - throw 'The reveal.js Markdown plugin requires marked to be loaded'; - } - - if( typeof hljs !== 'undefined' ) { - marked.setOptions({ - highlight: function( code, lang ) { - return hljs.highlightAuto( code, [lang] ).value; - } - }); - } - - var options = Reveal.getConfig().markdown; - - if ( options ) { - marked.setOptions( options ); - } - processSlides(); convertSlides(); }, diff --git a/doc/pub/How2ReadData/html/reveal.js/plugin/markdown/marked.js b/doc/pub/How2ReadData/html/reveal.js/plugin/markdown/marked.js index 555c1dc1d..70af29bf9 100644 --- a/doc/pub/How2ReadData/html/reveal.js/plugin/markdown/marked.js +++ b/doc/pub/How2ReadData/html/reveal.js/plugin/markdown/marked.js @@ -3,4 +3,4 @@ * Copyright (c) 2011-2014, Christopher Jeffrey. 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*){3,}(?:\\n+|$))")("def","\\n+(?="+block.def.source+")")();block.blockquote=replace(block.blockquote)("def",block.def)();block._tag="(?!(?:"+"a|em|strong|small|s|cite|q|dfn|abbr|data|time|code"+"|var|samp|kbd|sub|sup|i|b|u|mark|ruby|rt|rp|bdi|bdo"+"|span|br|wbr|ins|del|img)\\b)\\w+(?!:/|[^\\w\\s@]*@)\\b";block.html=replace(block.html)("comment",//)("closed",/<(tag)[\s\S]+?<\/\1>/)("closing",/])*?>/)(/tag/g,block._tag)();block.paragraph=replace(block.paragraph)("hr",block.hr)("heading",block.heading)("lheading",block.lheading)("blockquote",block.blockquote)("tag","<"+block._tag)("def",block.def)();block.normal=merge({},block);block.gfm=merge({},block.normal,{fences:/^ *(`{3,}|~{3,})[ \.]*(\S+)? *\n([\s\S]*?)\s*\1 *(?:\n+|$)/,paragraph:/^/,heading:/^ *(#{1,6}) +([^\n]+?) *#* *(?:\n+|$)/});block.gfm.paragraph=replace(block.paragraph)("(?!","(?!"+block.gfm.fences.source.replace("\\1","\\2")+"|"+block.list.source.replace("\\1","\\3")+"|")();block.tables=merge({},block.gfm,{nptable:/^ 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Error("Tokens array requires a `links` property.")}if(this.options.gfm){if(this.options.breaks){this.rules=inline.breaks}else{this.rules=inline.gfm}}else if(this.options.pedantic){this.rules=inline.pedantic}}InlineLexer.rules=inline;InlineLexer.output=function(src,links,options){var inline=new InlineLexer(links,options);return inline.output(src)};InlineLexer.prototype.output=function(src){var out="",link,text,href,cap;while(src){if(cap=this.rules.escape.exec(src)){src=src.substring(cap[0].length);out+=cap[1];continue}if(cap=this.rules.autolink.exec(src)){src=src.substring(cap[0].length);if(cap[2]==="@"){text=cap[1].charAt(6)===":"?this.mangle(cap[1].substring(7)):this.mangle(cap[1]);href=this.mangle("mailto:")+text}else{text=escape(cap[1]);href=text}out+=this.renderer.link(href,null,text);continue}if(!this.inLink&&(cap=this.rules.url.exec(src))){src=src.substring(cap[0].length);text=escape(cap[1]);href=text;out+=this.renderer.link(href,null,text);continue}if(cap=this.rules.tag.exec(src)){if(!this.inLink&&/^/i.test(cap[0])){this.inLink=false}src=src.substring(cap[0].length);out+=this.options.sanitize?this.options.sanitizer?this.options.sanitizer(cap[0]):escape(cap[0]):cap[0];continue}if(cap=this.rules.link.exec(src)){src=src.substring(cap[0].length);this.inLink=true;out+=this.outputLink(cap,{href:cap[2],title:cap[3]});this.inLink=false;continue}if((cap=this.rules.reflink.exec(src))||(cap=this.rules.nolink.exec(src))){src=src.substring(cap[0].length);link=(cap[2]||cap[1]).replace(/\s+/g," 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    \n"};Renderer.prototype.table=function(header,body){return"\n"+"\n"+header+"\n"+"\n"+body+"\n"+"
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    "};Renderer.prototype.del=function(text){return""+text+""};Renderer.prototype.link=function(href,title,text){if(this.options.sanitize){try{var prot=decodeURIComponent(unescape(href)).replace(/[^\w:]/g,"").toLowerCase()}catch(e){return""}if(prot.indexOf("javascript:")===0||prot.indexOf("vbscript:")===0){return""}}var out='    ";return out};Renderer.prototype.image=function(href,title,text){var out=''+text+'":">";return out};Renderer.prototype.text=function(text){return text};function Parser(options){this.tokens=[];this.token=null;this.options=options||marked.defaults;this.options.renderer=this.options.renderer||new Renderer;this.renderer=this.options.renderer;this.renderer.options=this.options}Parser.parse=function(src,options,renderer){var parser=new Parser(options,renderer);return parser.parse(src)};Parser.prototype.parse=function(src){this.inline=new InlineLexer(src.links,this.options,this.renderer);this.tokens=src.reverse();var out="";while(this.next()){out+=this.tok()}return out};Parser.prototype.next=function(){return this.token=this.tokens.pop()};Parser.prototype.peek=function(){return this.tokens[this.tokens.length-1]||0};Parser.prototype.parseText=function(){var body=this.token.text;while(this.peek().type==="text"){body+="\n"+this.next().text}return this.inline.output(body)};Parser.prototype.tok=function(){switch(this.token.type){case"space":{return""}case"hr":{return this.renderer.hr()}case"heading":{return this.renderer.heading(this.inline.output(this.token.text),this.token.depth,this.token.text)}case"code":{return this.renderer.code(this.token.text,this.token.lang,this.token.escaped)}case"table":{var header="",body="",i,row,cell,flags,j;cell="";for(i=0;i/g,">").replace(/"/g,""").replace(/'/g,"'")}function unescape(html){return html.replace(/&([#\w]+);/g,function(_,n){n=n.toLowerCase();if(n==="colon")return":";if(n.charAt(0)==="#"){return n.charAt(1)==="x"?String.fromCharCode(parseInt(n.substring(2),16)):String.fromCharCode(+n.substring(1))}return""})}function replace(regex,opt){regex=regex.source;opt=opt||"";return function self(name,val){if(!name)return new RegExp(regex,opt);val=val.source||val;val=val.replace(/(^|[^\[])\^/g,"$1");regex=regex.replace(name,val);return self}}function noop(){}noop.exec=noop;function merge(obj){var i=1,target,key;for(;iAn error occured:

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    reveal.js multiplex server.

    Generate token'); - res.end(); - }); - stream.on('readable', function() { - stream.pipe(res); - }); + fs.createReadStream(opts.baseDir + '/index.html').pipe(res); }); app.get("/token", function(req,res) { @@ -55,7 +47,7 @@ var createHash = function(secret) { }; // Actually listen -server.listen( opts.port || null ); +app.listen(opts.port || null); var brown = '\033[33m', green = '\033[32m', diff --git a/doc/pub/How2ReadData/html/reveal.js/plugin/multiplex/master.js b/doc/pub/How2ReadData/html/reveal.js/plugin/multiplex/master.js index 7f4bf4511..b6a7eb7dc 100644 --- a/doc/pub/How2ReadData/html/reveal.js/plugin/multiplex/master.js +++ b/doc/pub/How2ReadData/html/reveal.js/plugin/multiplex/master.js @@ -1,34 +1,51 @@ (function() { - // Don't emit events from inside of notes windows if ( window.location.search.match( /receiver/gi ) ) { return; } var multiplex = Reveal.getConfig().multiplex; - var socket = io.connect( multiplex.url ); + var socket = io.connect(multiplex.url); - function post() { + var notify = function( slideElement, indexh, indexv, origin ) { + if( typeof origin === 'undefined' && origin !== 'remote' ) { + var nextindexh; + var nextindexv; - var messageData = { - state: Reveal.getState(), - secret: multiplex.secret, - socketId: multiplex.id - }; + var fragmentindex = Reveal.getIndices().f; + if (typeof fragmentindex == 'undefined') { + fragmentindex = 0; + } - socket.emit( 'multiplex-statechanged', messageData ); + if (slideElement.nextElementSibling && slideElement.parentNode.nodeName == 'SECTION') { + nextindexh = indexh; + nextindexv = indexv + 1; + } else { + nextindexh = indexh + 1; + nextindexv = 0; + } + var slideData = { + indexh : indexh, + indexv : indexv, + indexf : fragmentindex, + nextindexh : nextindexh, + nextindexv : nextindexv, + secret: multiplex.secret, + socketId : multiplex.id + }; + + socket.emit('slidechanged', slideData); + } + } + + Reveal.addEventListener( 'slidechanged', function( event ) { + notify( event.currentSlide, event.indexh, event.indexv, event.origin ); + } ); + + var fragmentNotify = function( event ) { + notify( Reveal.getCurrentSlide(), Reveal.getIndices().h, Reveal.getIndices().v, event.origin ); }; - // post once the page is loaded, so the client follows also on "open URL". - window.addEventListener( 'load', post ); - - // Monitor events that trigger a change in state - Reveal.addEventListener( 'slidechanged', post ); - Reveal.addEventListener( 'fragmentshown', post ); - Reveal.addEventListener( 'fragmenthidden', post ); - Reveal.addEventListener( 'overviewhidden', post ); - Reveal.addEventListener( 'overviewshown', post ); - Reveal.addEventListener( 'paused', post ); - Reveal.addEventListener( 'resumed', post ); - -}()); + Reveal.addEventListener( 'fragmentshown', fragmentNotify ); + Reveal.addEventListener( 'fragmenthidden', fragmentNotify ); +}()); \ No newline at end of file diff --git a/doc/pub/How2ReadData/html/reveal.js/plugin/notes-server/client.js b/doc/pub/How2ReadData/html/reveal.js/plugin/notes-server/client.js index 00b277baf..628586ffb 100644 --- a/doc/pub/How2ReadData/html/reveal.js/plugin/notes-server/client.js +++ b/doc/pub/How2ReadData/html/reveal.js/plugin/notes-server/client.js @@ -41,15 +41,10 @@ } // When a new notes window connects, post our current state - socket.on( 'new-subscriber', function( data ) { + socket.on( 'connect', function( data ) { post(); } ); - // When the state changes from inside of the speaker view - socket.on( 'statechanged-speaker', function( data ) { - Reveal.setState( data.state ); - } ); - // Monitor events that trigger a change in state Reveal.addEventListener( 'slidechanged', post ); Reveal.addEventListener( 'fragmentshown', post ); diff --git a/doc/pub/How2ReadData/html/reveal.js/plugin/notes-server/index.js b/doc/pub/How2ReadData/html/reveal.js/plugin/notes-server/index.js index b95f07188..df917f112 100644 --- a/doc/pub/How2ReadData/html/reveal.js/plugin/notes-server/index.js +++ b/doc/pub/How2ReadData/html/reveal.js/plugin/notes-server/index.js @@ -1,40 +1,37 @@ -var http = require('http'); var express = require('express'); var fs = require('fs'); var io = require('socket.io'); +var _ = require('underscore'); var Mustache = require('mustache'); -var app = express(); +var app = express.createServer(); var staticDir = express.static; -var server = http.createServer(app); -io = io(server); +io = io.listen(app); var opts = { port : 1947, baseDir : __dirname + '/../../' }; -io.on( 'connection', function( socket ) { +io.sockets.on( 'connection', function( socket ) { - socket.on( 'new-subscriber', function( data ) { - socket.broadcast.emit( 'new-subscriber', data ); + socket.on( 'connect', function( data ) { + socket.broadcast.emit( 'connect', data ); }); socket.on( 'statechanged', function( data ) { - delete data.state.overview; socket.broadcast.emit( 'statechanged', data ); }); - socket.on( 'statechanged-speaker', function( data ) { - delete data.state.overview; - socket.broadcast.emit( 'statechanged-speaker', data ); - }); - }); -[ 'css', 'js', 'images', 'plugin', 'lib' ].forEach( function( dir ) { - app.use( '/' + dir, staticDir( opts.baseDir + dir ) ); +app.configure( function() { + + [ 'css', 'js', 'images', 'plugin', 'lib' ].forEach( function( dir ) { + app.use( '/' + dir, staticDir( opts.baseDir + dir ) ); + }); + }); app.get('/', function( req, res ) { @@ -55,7 +52,7 @@ app.get( '/notes/:socketId', function( req, res ) { }); // Actually listen -server.listen( opts.port || null ); +app.listen( opts.port || null ); var brown = '\033[33m', green = '\033[32m', @@ -65,5 +62,5 @@ var slidesLocation = 'http://localhost' + ( opts.port ? ( ':' + opts.port ) : '' console.log( brown + 'reveal.js - Speaker Notes' + reset ); console.log( '1. Open the slides at ' + green + slidesLocation + reset ); -console.log( '2. Click on the link in your JS console to go to the notes page' ); +console.log( '2. Click on the link your JS console to go to the notes page' ); console.log( '3. Advance through your slides and your notes will advance automatically' ); diff --git a/doc/pub/How2ReadData/html/reveal.js/plugin/notes-server/notes.html b/doc/pub/How2ReadData/html/reveal.js/plugin/notes-server/notes.html index ab8c5b17a..72d0317f1 100644 --- a/doc/pub/How2ReadData/html/reveal.js/plugin/notes-server/notes.html +++ b/doc/pub/How2ReadData/html/reveal.js/plugin/notes-server/notes.html @@ -8,7 +8,6 @@ @@ -247,7 +152,7 @@
    -
    Upcoming
    +
    UPCOMING:

    Time Click to Reset

    @@ -265,10 +170,6 @@
    -
    - - -
    @@ -281,20 +182,11 @@ currentState, currentSlide, upcomingSlide, - layoutLabel, - layoutDropdown, connected = false; var socket = io.connect( window.location.origin ), socketId = '{{socketId}}'; - var SPEAKER_LAYOUTS = { - 'default': 'Default', - 'wide': 'Wide', - 'tall': 'Tall', - 'notes-only': 'Notes only' - }; - socket.on( 'statechanged', function( data ) { // ignore data from sockets that aren't ours @@ -303,6 +195,7 @@ if( connected === false ) { connected = true; + setupIframes( data ); setupKeyboard(); setupNotes(); setupTimer(); @@ -313,28 +206,13 @@ } ); - setupLayout(); - - // Load our presentation iframes - setupIframes(); - - // Once the iframes have loaded, emit a signal saying there's - // a new subscriber which will trigger a 'statechanged' - // message to be sent back window.addEventListener( 'message', function( event ) { var data = JSON.parse( event.data ); if( data && data.namespace === 'reveal' ) { if( /ready/.test( data.eventName ) ) { - socket.emit( 'new-subscriber', { socketId: socketId } ); - } - } - - // Messages sent by reveal.js inside of the current slide preview - if( data && data.namespace === 'reveal' ) { - if( /slidechanged|fragmentshown|fragmenthidden|overviewshown|overviewhidden|paused|resumed/.test( data.eventName ) && currentState !== JSON.stringify( data.state ) ) { - socket.emit( 'statechanged-speaker', { state: data.state } ); + socket.emit( 'connect', { socketId: socketId } ); } } @@ -389,7 +267,7 @@ /** * Creates the preview iframes. */ - function setupIframes() { + function setupIframes( data ) { var params = [ 'receiver', @@ -399,8 +277,9 @@ 'backgroundTransition=none' ].join( '&' ); - var currentURL = '/?' + params + '&postMessageEvents=true'; - var upcomingURL = '/?' + params + '&controls=false'; + var hash = '#/' + data.state.indexh + '/' + data.state.indexv; + var currentURL = '/?' + params + '&postMessageEvents=true' + hash; + var upcomingURL = '/?' + params + '&controls=false' + hash; currentSlide = document.createElement( 'iframe' ); currentSlide.setAttribute( 'width', 1280 ); @@ -472,74 +351,6 @@ } - /** - * Sets up the speaker view layout and layout selector. - */ - function setupLayout() { - - layoutDropdown = document.querySelector( '.speaker-layout-dropdown' ); - layoutLabel = document.querySelector( '.speaker-layout-label' ); - - // Render the list of available layouts - for( var id in SPEAKER_LAYOUTS ) { - var option = document.createElement( 'option' ); - option.setAttribute( 'value', id ); - option.textContent = SPEAKER_LAYOUTS[ id ]; - layoutDropdown.appendChild( option ); - } - - // Monitor the dropdown for changes - layoutDropdown.addEventListener( 'change', function( event ) { - - setLayout( layoutDropdown.value ); - - }, false ); - - // Restore any currently persisted layout - setLayout( getLayout() ); - - } - - /** - * Sets a new speaker view layout. The layout is persisted - * in local storage. - */ - function setLayout( value ) { - - var title = SPEAKER_LAYOUTS[ value ]; - - layoutLabel.innerHTML = 'Layout' + ( title ? ( ': ' + title ) : '' ); - layoutDropdown.value = value; - - document.body.setAttribute( 'data-speaker-layout', value ); - - // Persist locally - if( window.localStorage ) { - window.localStorage.setItem( 'reveal-speaker-layout', value ); - } - - } - - /** - * Returns the ID of the most recently set speaker layout - * or our default layout if none has been set. - */ - function getLayout() { - - if( window.localStorage ) { - var layout = window.localStorage.getItem( 'reveal-speaker-layout' ); - if( layout ) { - return layout; - } - } - - // Default to the first record in the layouts hash - for( var id in SPEAKER_LAYOUTS ) { - return id; - } - - } - function zeroPadInteger( num ) { var str = '00' + parseInt( num ); diff --git a/doc/pub/How2ReadData/html/reveal.js/plugin/notes/notes.html b/doc/pub/How2ReadData/html/reveal.js/plugin/notes/notes.html index 4c5b799b5..0cc8cf612 100644 --- a/doc/pub/How2ReadData/html/reveal.js/plugin/notes/notes.html +++ b/doc/pub/How2ReadData/html/reveal.js/plugin/notes/notes.html @@ -8,7 +8,6 @@ + + + + + + + + + + + + + + + + + +
    +
    + + Data Analysis and Machine Learning: Recurrent neural networks +
    + +
    + +
    +
    + + +
    + +

     

     

     

    + + + + + + +
    +

    Data Analysis and Machine Learning: Recurrent neural networks

    + +

    + + +

    +Morten Hjorth-Jensen [1, 2] +
    + +

    + + +

    [1] Department of Physics, University of Oslo
    +
    [2] Department of Physics and Astronomy and National Superconducting Cyclotron Laboratory, Michigan State University
    +
    +

    +

    Jan 8, 2019

    +
    +

    + + +

    Read »

    + + +
    + +

    + +

    + + +
    + + + + + + + +
    + © 1999-2019, Morten Hjorth-Jensen. Released under CC Attribution-NonCommercial 4.0 license +
    + + + + + + diff --git a/doc/src/Recurrent/Recurrent-minted.pdf b/doc/src/Recurrent/Recurrent-minted.pdf new file mode 100644 index 000000000..7ab225033 Binary files /dev/null and b/doc/src/Recurrent/Recurrent-minted.pdf differ diff --git a/doc/src/Recurrent/Recurrent-plain-minted.tex b/doc/src/Recurrent/Recurrent-plain-minted.tex new file mode 100644 index 000000000..ad6d1237a --- /dev/null +++ b/doc/src/Recurrent/Recurrent-plain-minted.tex @@ -0,0 +1,171 @@ +%% +%% Automatically generated file from DocOnce source +%% (https://github.com/hplgit/doconce/) +%% +%% + + +%-------------------- begin preamble ---------------------- + +\documentclass[% +oneside, % oneside: electronic viewing, twoside: printing +final, % draft: marks overfull hboxes, figures with paths +10pt]{article} + +\listfiles % print all files needed to compile this document + +\usepackage{relsize,makeidx,color,setspace,amsmath,amsfonts,amssymb} +\usepackage[table]{xcolor} +\usepackage{bm,ltablex,microtype} + +\usepackage[pdftex]{graphicx} + +\usepackage[T1]{fontenc} +%\usepackage[latin1]{inputenc} +\usepackage{ucs} +\usepackage[utf8x]{inputenc} + +\usepackage{lmodern} % Latin Modern fonts derived from Computer Modern + +% Hyperlinks in PDF: +\definecolor{linkcolor}{rgb}{0,0,0.4} +\usepackage{hyperref} +\hypersetup{ + breaklinks=true, + colorlinks=true, + linkcolor=linkcolor, + urlcolor=linkcolor, + citecolor=black, + filecolor=black, + %filecolor=blue, + pdfmenubar=true, + pdftoolbar=true, + bookmarksdepth=3 % Uncomment (and tweak) for PDF bookmarks with more levels than the TOC + } +%\hyperbaseurl{} % hyperlinks are relative to this root + +\setcounter{tocdepth}{2} % levels in table of contents + +% --- fancyhdr package for fancy headers --- +\usepackage{fancyhdr} +\fancyhf{} % sets both header and footer to nothing +\renewcommand{\headrulewidth}{0pt} +\fancyfoot[LE,RO]{\thepage} +% Ensure copyright on titlepage (article style) and chapter pages (book style) +\fancypagestyle{plain}{ + \fancyhf{} + \fancyfoot[C]{{\footnotesize \copyright\ 1999-2019, Morten Hjorth-Jensen. Released under CC Attribution-NonCommercial 4.0 license}} +% \renewcommand{\footrulewidth}{0mm} + \renewcommand{\headrulewidth}{0mm} +} +% Ensure copyright on titlepages with \thispagestyle{empty} +\fancypagestyle{empty}{ + \fancyhf{} + \fancyfoot[C]{{\footnotesize \copyright\ 1999-2019, Morten Hjorth-Jensen. Released under CC Attribution-NonCommercial 4.0 license}} + \renewcommand{\footrulewidth}{0mm} + \renewcommand{\headrulewidth}{0mm} +} + +\pagestyle{fancy} + + +% prevent orhpans and widows +\clubpenalty = 10000 +\widowpenalty = 10000 + +% --- end of standard preamble for documents --- + + +% insert custom LaTeX commands... + +\raggedbottom +\makeindex +\usepackage[totoc]{idxlayout} % for index in the toc +\usepackage[nottoc]{tocbibind} % for references/bibliography in the toc + +%-------------------- end preamble ---------------------- + +\begin{document} + +% matching end for #ifdef PREAMBLE + +\newcommand{\exercisesection}[1]{\subsection*{#1}} + + +% ------------------- main content ---------------------- + + + +% ----------------- title ------------------------- + +\thispagestyle{empty} + +\begin{center} +{\LARGE\bf +\begin{spacing}{1.25} +Data Analysis and Machine Learning: Recurrent neural networks +\end{spacing} +} +\end{center} + +% ----------------- author(s) ------------------------- + +\begin{center} +{\bf Morten Hjorth-Jensen${}^{1, 2}$} \\ [0mm] +\end{center} + +\begin{center} +% List of all institutions: +\centerline{{\small ${}^1$Department of Physics, University of Oslo}} +\centerline{{\small ${}^2$Department of Physics and Astronomy and National Superconducting Cyclotron Laboratory, Michigan State University}} +\end{center} + +% ----------------- end author(s) ------------------------- + +% --- begin date --- +\begin{center} +Jan 8, 2019 +\end{center} +% --- end date --- + +\vspace{1cm} + + +% !split +\subsection*{Recurrent neural networks: Overarching view} + +Till now our focus has been, including convolutional neural networks as well, +on feedforward neural networks. The output or the +activations flow only in one direction, from the input layer to the +output layer. + +A recurrent neural network (RNN) looks very much like a feedforward +neural network, except that it also has connections pointing +backward. + +RNNs are used to analyze time series data such as stock prices, and +tell you when to buy or sell. In autonomous driving systems, they can +anticipate car trajectories and help avoid accidents. More generally, +they can work on sequences of arbitrary lengths, rather than on +fixed-sized inputs like all the nets we have discussed so far. For +example, they can take sentences, documents, or audio samples as +input, making them extremely useful for natural language processing +systems such as automatic translation and speech-to-text. + + +% !split +\subsection*{Set up of an RNN} + +The figure here displays a simple example of an RNN, with inputs $x_t$ +at a given time $t$ and outputs $y_t$. Introducing time as a variable +offers an intutitive way of understanding these networks. In addition +to the inputs $x_t$, the layer at a time $t$ receives also as input +the output from the previous layer $t-1$, that is $y_{t1}$. + +This means also that we need to have weights that link both the inputs $x_t$ to the outputs $y_t$ as well as weights that link +the output from the previous time $y_{t-1}$ and $y_t$. The figure here shows an example of a simple RNN. + +% ------------------- end of main content --------------- + +\end{document} + diff --git a/doc/src/Recurrent/Recurrent-reveal.html b/doc/src/Recurrent/Recurrent-reveal.html new file mode 100644 index 000000000..a073f8b6a --- /dev/null +++ b/doc/src/Recurrent/Recurrent-reveal.html @@ -0,0 +1,346 @@ + + + + + + + +Data Analysis and Machine Learning: Recurrent neural networks + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
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    Data Analysis and Machine Learning: Recurrent neural networks

    + +

    + + +

    +Morten Hjorth-Jensen [1, 2] +
    + +

     
    + + +

    [1] Department of Physics, University of Oslo
    +
    [2] Department of Physics and Astronomy and National Superconducting Cyclotron Laboratory, Michigan State University
    +
    +

     
    +

    Jan 8, 2019

    +
    +

    + +

    + © 1999-2019, Morten Hjorth-Jensen. Released under CC Attribution-NonCommercial 4.0 license +
    +
    + + +
    +

    Recurrent neural networks: Overarching view

    + +

    +Till now our focus has been, including convolutional neural networks as well, +on feedforward neural networks. The output or the +activations flow only in one direction, from the input layer to the +output layer. + +

    +A recurrent neural network (RNN) looks very much like a feedforward +neural network, except that it also has connections pointing +backward. + +

    +RNNs are used to analyze time series data such as stock prices, and +tell you when to buy or sell. In autonomous driving systems, they can +anticipate car trajectories and help avoid accidents. More generally, +they can work on sequences of arbitrary lengths, rather than on +fixed-sized inputs like all the nets we have discussed so far. For +example, they can take sentences, documents, or audio samples as +input, making them extremely useful for natural language processing +systems such as automatic translation and speech-to-text. +

    + + +
    +

    Set up of an RNN

    + +

    +The figure here displays a simple example of an RNN, with inputs \( x_t \) +at a given time \( t \) and outputs \( y_t \). Introducing time as a variable +offers an intutitive way of understanding these networks. In addition +to the inputs \( x_t \), the layer at a time \( t \) receives also as input +the output from the previous layer \( t-1 \), that is \( y_{t1} \). + +

    +This means also that we need to have weights that link both the inputs \( x_t \) to the outputs \( y_t \) as well as weights that link +the output from the previous time \( y_{t-1} \) and \( y_t \). The figure here shows an example of a simple RNN. +

    + + + +
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    + + + + + + + + + + + + diff --git a/doc/src/Recurrent/Recurrent-solarized.html b/doc/src/Recurrent/Recurrent-solarized.html new file mode 100644 index 000000000..ca9871a5c --- /dev/null +++ b/doc/src/Recurrent/Recurrent-solarized.html @@ -0,0 +1,139 @@ + + + + + + + + +Data Analysis and Machine Learning: Recurrent neural networks + + + + + + + + + + + + + + + + + + + + + + + + + + + + +

    Data Analysis and Machine Learning: Recurrent neural networks

    + +

    + + +

    +Morten Hjorth-Jensen [1, 2] +
    + +

    + + +

    [1] Department of Physics, University of Oslo
    +
    [2] Department of Physics and Astronomy and National Superconducting Cyclotron Laboratory, Michigan State University
    +
    +

    +

    Jan 8, 2019

    +
    +

    +









    + +

    Recurrent neural networks: Overarching view

    + +

    +Till now our focus has been, including convolutional neural networks as well, +on feedforward neural networks. The output or the +activations flow only in one direction, from the input layer to the +output layer. + +

    +A recurrent neural network (RNN) looks very much like a feedforward +neural network, except that it also has connections pointing +backward. + +

    +RNNs are used to analyze time series data such as stock prices, and +tell you when to buy or sell. In autonomous driving systems, they can +anticipate car trajectories and help avoid accidents. More generally, +they can work on sequences of arbitrary lengths, rather than on +fixed-sized inputs like all the nets we have discussed so far. For +example, they can take sentences, documents, or audio samples as +input, making them extremely useful for natural language processing +systems such as automatic translation and speech-to-text. + +

    +









    + +

    Set up of an RNN

    + +

    +The figure here displays a simple example of an RNN, with inputs \( x_t \) +at a given time \( t \) and outputs \( y_t \). Introducing time as a variable +offers an intutitive way of understanding these networks. In addition +to the inputs \( x_t \), the layer at a time \( t \) receives also as input +the output from the previous layer \( t-1 \), that is \( y_{t1} \). + +

    +This means also that we need to have weights that link both the inputs \( x_t \) to the outputs \( y_t \) as well as weights that link +the output from the previous time \( y_{t-1} \) and \( y_t \). The figure here shows an example of a simple RNN. + + + + +

    + © 1999-2019, Morten Hjorth-Jensen. Released under CC Attribution-NonCommercial 4.0 license +
    + + + + + + diff --git a/doc/src/Recurrent/Recurrent.html b/doc/src/Recurrent/Recurrent.html new file mode 100644 index 000000000..55e404e12 --- /dev/null +++ b/doc/src/Recurrent/Recurrent.html @@ -0,0 +1,144 @@ + + + + + + + + +Data Analysis and Machine Learning: Recurrent neural networks + + + + + + + + + + + + + + + + + + + + + + + +

    Data Analysis and Machine Learning: Recurrent neural networks

    + +

    + + +

    +Morten Hjorth-Jensen [1, 2] +
    + +

    + + +

    [1] Department of Physics, University of Oslo
    +
    [2] Department of Physics and Astronomy and National Superconducting Cyclotron Laboratory, Michigan State University
    +
    +

    +

    Jan 8, 2019

    +
    +

    +









    + +

    Recurrent neural networks: Overarching view

    + +

    +Till now our focus has been, including convolutional neural networks as well, +on feedforward neural networks. The output or the +activations flow only in one direction, from the input layer to the +output layer. + +

    +A recurrent neural network (RNN) looks very much like a feedforward +neural network, except that it also has connections pointing +backward. + +

    +RNNs are used to analyze time series data such as stock prices, and +tell you when to buy or sell. In autonomous driving systems, they can +anticipate car trajectories and help avoid accidents. More generally, +they can work on sequences of arbitrary lengths, rather than on +fixed-sized inputs like all the nets we have discussed so far. For +example, they can take sentences, documents, or audio samples as +input, making them extremely useful for natural language processing +systems such as automatic translation and speech-to-text. + +

    +









    + +

    Set up of an RNN

    + +

    +The figure here displays a simple example of an RNN, with inputs \( x_t \) +at a given time \( t \) and outputs \( y_t \). Introducing time as a variable +offers an intutitive way of understanding these networks. In addition +to the inputs \( x_t \), the layer at a time \( t \) receives also as input +the output from the previous layer \( t-1 \), that is \( y_{t1} \). + +

    +This means also that we need to have weights that link both the inputs \( x_t \) to the outputs \( y_t \) as well as weights that link +the output from the previous time \( y_{t-1} \) and \( y_t \). The figure here shows an example of a simple RNN. + + + + +

    + © 1999-2019, Morten Hjorth-Jensen. Released under CC Attribution-NonCommercial 4.0 license +
    + + + + + + diff --git a/doc/src/Recurrent/Recurrent.ipynb b/doc/src/Recurrent/Recurrent.ipynb new file mode 100644 index 000000000..56545c516 --- /dev/null +++ b/doc/src/Recurrent/Recurrent.ipynb @@ -0,0 +1,57 @@ +{ + "cells": [ + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "\n", + "# Data Analysis and Machine Learning: Recurrent neural networks\n", + "\n", + " \n", + "**Morten Hjorth-Jensen**, Department of Physics, University of Oslo and Department of Physics and Astronomy and National Superconducting Cyclotron Laboratory, Michigan State University\n", + "\n", + "Date: **Jan 8, 2019**\n", + "\n", + "Copyright 1999-2019, Morten Hjorth-Jensen. Released under CC Attribution-NonCommercial 4.0 license\n", + "\n", + "\n", + "\n", + "\n", + "## Recurrent neural networks: Overarching view\n", + "\n", + "Till now our focus has been, including convolutional neural networks as well, \n", + "on feedforward neural networks. The output or the\n", + "activations flow only in one direction, from the input layer to the\n", + "output layer.\n", + "\n", + "A recurrent neural network (RNN) looks very much like a feedforward\n", + "neural network, except that it also has connections pointing\n", + "backward. \n", + "\n", + "RNNs are used to analyze time series data such as stock prices, and\n", + "tell you when to buy or sell. In autonomous driving systems, they can\n", + "anticipate car trajectories and help avoid accidents. More generally,\n", + "they can work on sequences of arbitrary lengths, rather than on\n", + "fixed-sized inputs like all the nets we have discussed so far. For\n", + "example, they can take sentences, documents, or audio samples as\n", + "input, making them extremely useful for natural language processing\n", + "systems such as automatic translation and speech-to-text.\n", + "\n", + "\n", + "## Set up of an RNN\n", + "\n", + "The figure here displays a simple example of an RNN, with inputs $x_t$\n", + "at a given time $t$ and outputs $y_t$. Introducing time as a variable\n", + "offers an intutitive way of understanding these networks. In addition\n", + "to the inputs $x_t$, the layer at a time $t$ receives also as input\n", + "the output from the previous layer $t-1$, that is $y_{t1}$.\n", + "\n", + "This means also that we need to have weights that link both the inputs $x_t$ to the outputs $y_t$ as well as weights that link\n", + "the output from the previous time $y_{t-1}$ and $y_t$. The figure here shows an example of a simple RNN." + ] + } + ], + "metadata": {}, + "nbformat": 4, + "nbformat_minor": 2 +} diff --git a/doc/src/Recurrent/Recurrent.p.tex b/doc/src/Recurrent/Recurrent.p.tex new file mode 100644 index 000000000..fbe660f13 --- /dev/null +++ b/doc/src/Recurrent/Recurrent.p.tex @@ -0,0 +1,199 @@ +%% +%% Automatically generated file from DocOnce source +%% (https://github.com/hplgit/doconce/) +%% +%% +% #ifdef PTEX2TEX_EXPLANATION +%% +%% The file follows the ptex2tex extended LaTeX format, see +%% ptex2tex: http://code.google.com/p/ptex2tex/ +%% +%% Run +%% ptex2tex myfile +%% or +%% doconce ptex2tex myfile +%% +%% to turn myfile.p.tex into an ordinary LaTeX file myfile.tex. +%% (The ptex2tex program: http://code.google.com/p/ptex2tex) +%% Many preprocess options can be added to ptex2tex or doconce ptex2tex +%% +%% ptex2tex -DMINTED myfile +%% doconce ptex2tex myfile envir=minted +%% +%% ptex2tex will typeset code environments according to a global or local +%% .ptex2tex.cfg configure file. doconce ptex2tex will typeset code +%% according to options on the command line (just type doconce ptex2tex to +%% see examples). If doconce ptex2tex has envir=minted, it enables the +%% minted style without needing -DMINTED. +% #endif + +% #define PREAMBLE + +% #ifdef PREAMBLE +%-------------------- begin preamble ---------------------- + +\documentclass[% +oneside, % oneside: electronic viewing, twoside: printing +final, % draft: marks overfull hboxes, figures with paths +10pt]{article} + +\listfiles % print all files needed to compile this document + +\usepackage{relsize,makeidx,color,setspace,amsmath,amsfonts,amssymb} +\usepackage[table]{xcolor} +\usepackage{bm,ltablex,microtype} + +\usepackage[pdftex]{graphicx} + +\usepackage[T1]{fontenc} +%\usepackage[latin1]{inputenc} +\usepackage{ucs} +\usepackage[utf8x]{inputenc} + +\usepackage{lmodern} % Latin Modern fonts derived from Computer Modern + +% Hyperlinks in PDF: +\definecolor{linkcolor}{rgb}{0,0,0.4} +\usepackage{hyperref} +\hypersetup{ + breaklinks=true, + colorlinks=true, + linkcolor=linkcolor, + urlcolor=linkcolor, + citecolor=black, + filecolor=black, + %filecolor=blue, + pdfmenubar=true, + pdftoolbar=true, + bookmarksdepth=3 % Uncomment (and tweak) for PDF bookmarks with more levels than the TOC + } +%\hyperbaseurl{} % hyperlinks are relative to this root + +\setcounter{tocdepth}{2} % levels in table of contents + +% --- fancyhdr package for fancy headers --- +\usepackage{fancyhdr} +\fancyhf{} % sets both header and footer to nothing +\renewcommand{\headrulewidth}{0pt} +\fancyfoot[LE,RO]{\thepage} +% Ensure copyright on titlepage (article style) and chapter pages (book style) +\fancypagestyle{plain}{ + \fancyhf{} + \fancyfoot[C]{{\footnotesize \copyright\ 1999-2019, Morten Hjorth-Jensen. Released under CC Attribution-NonCommercial 4.0 license}} +% \renewcommand{\footrulewidth}{0mm} + \renewcommand{\headrulewidth}{0mm} +} +% Ensure copyright on titlepages with \thispagestyle{empty} +\fancypagestyle{empty}{ + \fancyhf{} + \fancyfoot[C]{{\footnotesize \copyright\ 1999-2019, Morten Hjorth-Jensen. Released under CC Attribution-NonCommercial 4.0 license}} + \renewcommand{\footrulewidth}{0mm} + \renewcommand{\headrulewidth}{0mm} +} + +\pagestyle{fancy} + + +% prevent orhpans and widows +\clubpenalty = 10000 +\widowpenalty = 10000 + +% --- end of standard preamble for documents --- + + +% insert custom LaTeX commands... + +\raggedbottom +\makeindex +\usepackage[totoc]{idxlayout} % for index in the toc +\usepackage[nottoc]{tocbibind} % for references/bibliography in the toc + +%-------------------- end preamble ---------------------- + +\begin{document} + +% matching end for #ifdef PREAMBLE +% #endif + +\newcommand{\exercisesection}[1]{\subsection*{#1}} + + +% ------------------- main content ---------------------- + + + +% ----------------- title ------------------------- + +\thispagestyle{empty} + +\begin{center} +{\LARGE\bf +\begin{spacing}{1.25} +Data Analysis and Machine Learning: Recurrent neural networks +\end{spacing} +} +\end{center} + +% ----------------- author(s) ------------------------- + +\begin{center} +{\bf Morten Hjorth-Jensen${}^{1, 2}$} \\ [0mm] +\end{center} + +\begin{center} +% List of all institutions: +\centerline{{\small ${}^1$Department of Physics, University of Oslo}} +\centerline{{\small ${}^2$Department of Physics and Astronomy and National Superconducting Cyclotron Laboratory, Michigan State University}} +\end{center} + +% ----------------- end author(s) ------------------------- + +% --- begin date --- +\begin{center} +Jan 8, 2019 +\end{center} +% --- end date --- + +\vspace{1cm} + + +% !split +\subsection{Recurrent neural networks: Overarching view} + +Till now our focus has been, including convolutional neural networks as well, +on feedforward neural networks. The output or the +activations flow only in one direction, from the input layer to the +output layer. + +A recurrent neural network (RNN) looks very much like a feedforward +neural network, except that it also has connections pointing +backward. + +RNNs are used to analyze time series data such as stock prices, and +tell you when to buy or sell. In autonomous driving systems, they can +anticipate car trajectories and help avoid accidents. More generally, +they can work on sequences of arbitrary lengths, rather than on +fixed-sized inputs like all the nets we have discussed so far. For +example, they can take sentences, documents, or audio samples as +input, making them extremely useful for natural language processing +systems such as automatic translation and speech-to-text. + + +% !split +\subsection{Set up of an RNN} + +The figure here displays a simple example of an RNN, with inputs $x_t$ +at a given time $t$ and outputs $y_t$. Introducing time as a variable +offers an intutitive way of understanding these networks. In addition +to the inputs $x_t$, the layer at a time $t$ receives also as input +the output from the previous layer $t-1$, that is $y_{t1}$. + +This means also that we need to have weights that link both the inputs $x_t$ to the outputs $y_t$ as well as weights that link +the output from the previous time $y_{t-1}$ and $y_t$. The figure here shows an example of a simple RNN. + +% ------------------- end of main content --------------- + +% #ifdef PREAMBLE +\end{document} +% #endif + diff --git a/doc/src/Recurrent/Recurrent.tex b/doc/src/Recurrent/Recurrent.tex new file mode 100644 index 000000000..ad6d1237a --- /dev/null +++ b/doc/src/Recurrent/Recurrent.tex @@ -0,0 +1,171 @@ +%% +%% Automatically generated file from DocOnce source +%% (https://github.com/hplgit/doconce/) +%% +%% + + +%-------------------- begin preamble ---------------------- + +\documentclass[% +oneside, % oneside: electronic viewing, twoside: printing +final, % draft: marks overfull hboxes, figures with paths +10pt]{article} + +\listfiles % print all files needed to compile this document + +\usepackage{relsize,makeidx,color,setspace,amsmath,amsfonts,amssymb} +\usepackage[table]{xcolor} +\usepackage{bm,ltablex,microtype} + +\usepackage[pdftex]{graphicx} + +\usepackage[T1]{fontenc} +%\usepackage[latin1]{inputenc} +\usepackage{ucs} +\usepackage[utf8x]{inputenc} + +\usepackage{lmodern} % Latin Modern fonts derived from Computer Modern + +% Hyperlinks in PDF: +\definecolor{linkcolor}{rgb}{0,0,0.4} +\usepackage{hyperref} +\hypersetup{ + breaklinks=true, + colorlinks=true, + linkcolor=linkcolor, + urlcolor=linkcolor, + citecolor=black, + filecolor=black, + %filecolor=blue, + pdfmenubar=true, + pdftoolbar=true, + bookmarksdepth=3 % Uncomment (and tweak) for PDF bookmarks with more levels than the TOC + } +%\hyperbaseurl{} % hyperlinks are relative to this root + +\setcounter{tocdepth}{2} % levels in table of contents + +% --- fancyhdr package for fancy headers --- +\usepackage{fancyhdr} +\fancyhf{} % sets both header and footer to nothing +\renewcommand{\headrulewidth}{0pt} +\fancyfoot[LE,RO]{\thepage} +% Ensure copyright on titlepage (article style) and chapter pages (book style) +\fancypagestyle{plain}{ + \fancyhf{} + \fancyfoot[C]{{\footnotesize \copyright\ 1999-2019, Morten Hjorth-Jensen. Released under CC Attribution-NonCommercial 4.0 license}} +% \renewcommand{\footrulewidth}{0mm} + \renewcommand{\headrulewidth}{0mm} +} +% Ensure copyright on titlepages with \thispagestyle{empty} +\fancypagestyle{empty}{ + \fancyhf{} + \fancyfoot[C]{{\footnotesize \copyright\ 1999-2019, Morten Hjorth-Jensen. Released under CC Attribution-NonCommercial 4.0 license}} + \renewcommand{\footrulewidth}{0mm} + \renewcommand{\headrulewidth}{0mm} +} + +\pagestyle{fancy} + + +% prevent orhpans and widows +\clubpenalty = 10000 +\widowpenalty = 10000 + +% --- end of standard preamble for documents --- + + +% insert custom LaTeX commands... + +\raggedbottom +\makeindex +\usepackage[totoc]{idxlayout} % for index in the toc +\usepackage[nottoc]{tocbibind} % for references/bibliography in the toc + +%-------------------- end preamble ---------------------- + +\begin{document} + +% matching end for #ifdef PREAMBLE + +\newcommand{\exercisesection}[1]{\subsection*{#1}} + + +% ------------------- main content ---------------------- + + + +% ----------------- title ------------------------- + +\thispagestyle{empty} + +\begin{center} +{\LARGE\bf +\begin{spacing}{1.25} +Data Analysis and Machine Learning: Recurrent neural networks +\end{spacing} +} +\end{center} + +% ----------------- author(s) ------------------------- + +\begin{center} +{\bf Morten Hjorth-Jensen${}^{1, 2}$} \\ [0mm] +\end{center} + +\begin{center} +% List of all institutions: +\centerline{{\small ${}^1$Department of Physics, University of Oslo}} +\centerline{{\small ${}^2$Department of Physics and Astronomy and National Superconducting Cyclotron Laboratory, Michigan State University}} +\end{center} + +% ----------------- end author(s) ------------------------- + +% --- begin date --- +\begin{center} +Jan 8, 2019 +\end{center} +% --- end date --- + +\vspace{1cm} + + +% !split +\subsection*{Recurrent neural networks: Overarching view} + +Till now our focus has been, including convolutional neural networks as well, +on feedforward neural networks. The output or the +activations flow only in one direction, from the input layer to the +output layer. + +A recurrent neural network (RNN) looks very much like a feedforward +neural network, except that it also has connections pointing +backward. + +RNNs are used to analyze time series data such as stock prices, and +tell you when to buy or sell. In autonomous driving systems, they can +anticipate car trajectories and help avoid accidents. More generally, +they can work on sequences of arbitrary lengths, rather than on +fixed-sized inputs like all the nets we have discussed so far. For +example, they can take sentences, documents, or audio samples as +input, making them extremely useful for natural language processing +systems such as automatic translation and speech-to-text. + + +% !split +\subsection*{Set up of an RNN} + +The figure here displays a simple example of an RNN, with inputs $x_t$ +at a given time $t$ and outputs $y_t$. Introducing time as a variable +offers an intutitive way of understanding these networks. In addition +to the inputs $x_t$, the layer at a time $t$ receives also as input +the output from the previous layer $t-1$, that is $y_{t1}$. + +This means also that we need to have weights that link both the inputs $x_t$ to the outputs $y_t$ as well as weights that link +the output from the previous time $y_{t-1}$ and $y_t$. The figure here shows an example of a simple RNN. + +% ------------------- end of main content --------------- + +\end{document} + diff --git a/doc/src/Recurrent/ipynb-Recurrent-src.tar.gz b/doc/src/Recurrent/ipynb-Recurrent-src.tar.gz new file mode 100644 index 000000000..33f7542bf Binary files /dev/null and b/doc/src/Recurrent/ipynb-Recurrent-src.tar.gz differ diff --git a/doc/src/Recurrent/reveal.js/.gitignore b/doc/src/Recurrent/reveal.js/.gitignore new file mode 100644 index 000000000..a5df3133d --- /dev/null +++ b/doc/src/Recurrent/reveal.js/.gitignore @@ -0,0 +1,8 @@ +.DS_Store +.svn +log/*.log +tmp/** +node_modules/ +.sass-cache +css/reveal.min.css +js/reveal.min.js diff --git a/doc/src/Recurrent/reveal.js/.travis.yml b/doc/src/Recurrent/reveal.js/.travis.yml new file mode 100644 index 000000000..165d9ae9f --- /dev/null +++ b/doc/src/Recurrent/reveal.js/.travis.yml @@ -0,0 +1,5 @@ +language: node_js +node_js: + - 0.10 +before_script: + - npm install -g grunt-cli \ No newline at end of file diff --git a/doc/src/Recurrent/reveal.js/CONTRIBUTING.md b/doc/src/Recurrent/reveal.js/CONTRIBUTING.md new file mode 100644 index 000000000..c2091e88f --- /dev/null +++ b/doc/src/Recurrent/reveal.js/CONTRIBUTING.md @@ -0,0 +1,23 @@ +## Contributing + +Please keep the [issue tracker](http://github.com/hakimel/reveal.js/issues) limited to **bug reports**, **feature requests** and **pull requests**. + + +### Personal Support +If you have personal support or setup questions the best place to ask those are [StackOverflow](http://stackoverflow.com/questions/tagged/reveal.js). + + +### Bug Reports +When reporting a bug make sure to include information about which browser and operating system you are on as well as the necessary steps to reproduce the issue. If possible please include a link to a sample presentation where the bug can be tested. + + +### Pull Requests +- Should follow the coding style of the file you work in, most importantly: + - Tabs to indent + - Single-quoted strings +- Should be made towards the **dev branch** +- Should be submitted from a feature/topic branch (not your master) + + +### Plugins +Please do not submit plugins as pull requests. They should be maintained in their own separate repository. More information here: https://github.com/hakimel/reveal.js/wiki/Plugin-Guidelines diff --git a/doc/src/Recurrent/reveal.js/Gruntfile.js b/doc/src/Recurrent/reveal.js/Gruntfile.js new file mode 100644 index 000000000..b257e8f32 --- /dev/null +++ b/doc/src/Recurrent/reveal.js/Gruntfile.js @@ -0,0 +1,140 @@ +/* global module:false */ +module.exports = function(grunt) { + var port = grunt.option('port') || 8000; + // Project configuration + grunt.initConfig({ + pkg: grunt.file.readJSON('package.json'), + meta: { + banner: + '/*!\n' + + ' * reveal.js <%= pkg.version %> (<%= grunt.template.today("yyyy-mm-dd, HH:MM") %>)\n' + + ' * http://lab.hakim.se/reveal-js\n' + + ' * MIT licensed\n' + + ' *\n' + + ' * Copyright (C) 2014 Hakim El Hattab, http://hakim.se\n' + + ' */' + }, + + qunit: { + files: [ 'test/*.html' ] + }, + + uglify: { + options: { + banner: '<%= meta.banner %>\n' + }, + build: { + src: 'js/reveal.js', + dest: 'js/reveal.min.js' + } + }, + + cssmin: { + compress: { + files: { + 'css/reveal.min.css': [ 'css/reveal.css' ] + } + } + }, + + sass: { + main: { + files: { + 'css/theme/darkgray.css': 'css/theme/source/darkgray.scss', + 'css/theme/beigesmall.css': 'css/theme/source/beigesmall.scss', + 'css/theme/cbc.css': 'css/theme/source/cbc.scss', + 'css/theme/default.css': 'css/theme/source/default.scss', + 'css/theme/beige.css': 'css/theme/source/beige.scss', + 'css/theme/night.css': 'css/theme/source/night.scss', + 'css/theme/serif.css': 'css/theme/source/serif.scss', + 'css/theme/simple.css': 'css/theme/source/simple.scss', + 'css/theme/sky.css': 'css/theme/source/sky.scss', + 'css/theme/moon.css': 'css/theme/source/moon.scss', + 'css/theme/solarized.css': 'css/theme/source/solarized.scss', + 'css/theme/blood.css': 'css/theme/source/blood.scss' + } + } + }, + + jshint: { + options: { + curly: false, + eqeqeq: true, + immed: true, + latedef: true, + newcap: true, + noarg: true, + sub: true, + undef: true, + eqnull: true, + browser: true, + expr: true, + globals: { + head: false, + module: false, + console: false, + unescape: false + } + }, + files: [ 'Gruntfile.js', 'js/reveal.js' ] + }, + + connect: { + server: { + options: { + port: port, + base: '.' + } + } + }, + + zip: { + 'reveal-js-presentation.zip': [ + 'index.html', + 'css/**', + 'js/**', + 'lib/**', + 'images/**', + 'plugin/**' + ] + }, + + watch: { + main: { + files: [ 'Gruntfile.js', 'js/reveal.js', 'css/reveal.css' ], + tasks: 'default' + }, + theme: { + files: [ 'css/theme/source/*.scss', 'css/theme/template/*.scss' ], + tasks: 'themes' + } + } + + }); + + // Dependencies + grunt.loadNpmTasks( 'grunt-contrib-qunit' ); + grunt.loadNpmTasks( 'grunt-contrib-jshint' ); + grunt.loadNpmTasks( 'grunt-contrib-cssmin' ); + grunt.loadNpmTasks( 'grunt-contrib-uglify' ); + grunt.loadNpmTasks( 'grunt-contrib-watch' ); + grunt.loadNpmTasks( 'grunt-contrib-sass' ); + grunt.loadNpmTasks( 'grunt-contrib-connect' ); + grunt.loadNpmTasks( 'grunt-zip' ); + + // Default task + grunt.registerTask( 'default', [ 'jshint', 'cssmin', 'uglify', 'qunit' ] ); + + // Theme task + grunt.registerTask( 'themes', [ 'sass' ] ); + + // Package presentation to archive + grunt.registerTask( 'package', [ 'default', 'zip' ] ); + + // Serve presentation locally + grunt.registerTask( 'serve', [ 'connect', 'watch' ] ); + + // Run tests + grunt.registerTask( 'test', [ 'jshint', 'qunit' ] ); + +}; diff --git a/doc/src/Recurrent/reveal.js/LICENSE b/doc/src/Recurrent/reveal.js/LICENSE new file mode 100644 index 000000000..09623076f --- /dev/null +++ b/doc/src/Recurrent/reveal.js/LICENSE @@ -0,0 +1,19 @@ +Copyright (C) 2015 Hakim El Hattab, http://hakim.se + +Permission is hereby granted, free of charge, to any person obtaining a copy +of this software and associated documentation files (the "Software"), to deal +in the Software without restriction, including without limitation the rights +to use, copy, modify, merge, publish, distribute, sublicense, and/or sell +copies of the Software, and to permit persons to whom the Software is +furnished to do so, subject to the following conditions: + +The above copyright notice and this permission notice shall be included in +all copies or substantial portions of the Software. + +THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR +IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, +FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE +AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER +LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, +OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN +THE SOFTWARE. \ No newline at end of file diff --git a/doc/src/Recurrent/reveal.js/README.md b/doc/src/Recurrent/reveal.js/README.md new file mode 100644 index 000000000..573b19597 --- /dev/null +++ b/doc/src/Recurrent/reveal.js/README.md @@ -0,0 +1,1052 @@ +# reveal.js [![Build Status](https://travis-ci.org/hakimel/reveal.js.svg?branch=master)](https://travis-ci.org/hakimel/reveal.js) + +A framework for easily creating beautiful presentations using HTML. [Check out the live demo](http://lab.hakim.se/reveal-js/). + +reveal.js comes with a broad range of features including [nested slides](https://github.com/hakimel/reveal.js#markup), [Markdown contents](https://github.com/hakimel/reveal.js#markdown), [PDF export](https://github.com/hakimel/reveal.js#pdf-export), [speaker notes](https://github.com/hakimel/reveal.js#speaker-notes) and a [JavaScript API](https://github.com/hakimel/reveal.js#api). It's best viewed in a modern browser but [fallbacks](https://github.com/hakimel/reveal.js/wiki/Browser-Support) are available to make sure your presentation can still be viewed elsewhere. + + +#### More reading: +- [Installation](#installation): Step-by-step instructions for getting reveal.js running on your computer. +- [Changelog](https://github.com/hakimel/reveal.js/releases): Up-to-date version history. +- [Examples](https://github.com/hakimel/reveal.js/wiki/Example-Presentations): Presentations created with reveal.js, add your own! +- [Browser Support](https://github.com/hakimel/reveal.js/wiki/Browser-Support): Explanation of browser support and fallbacks. +- [Plugins](https://github.com/hakimel/reveal.js/wiki/Plugins,-Tools-and-Hardware): A list of plugins that can be used to extend reveal.js. + +## Online Editor + +Presentations are written using HTML or Markdown but there's also an online editor for those of you who prefer a graphical interface. Give it a try at [http://slides.com](http://slides.com). + + +## Instructions + +### Markup + +Markup hierarchy needs to be ``
    `` where the ``
    `` represents one slide and can be repeated indefinitely. If you place multiple ``
    ``'s inside of another ``
    `` they will be shown as vertical slides. The first of the vertical slides is the "root" of the others (at the top), and it will be included in the horizontal sequence. For example: + +```html +
    +
    +
    Single Horizontal Slide
    +
    +
    Vertical Slide 1
    +
    Vertical Slide 2
    +
    +
    +
    +``` + +### Markdown + +It's possible to write your slides using Markdown. To enable Markdown, add the ```data-markdown``` attribute to your ```
    ``` elements and wrap the contents in a ``` +
    +``` + +#### External Markdown + +You can write your content as a separate file and have reveal.js load it at runtime. Note the separator arguments which determine how slides are delimited in the external file. The ```data-charset``` attribute is optional and specifies which charset to use when loading the external file. + +When used locally, this feature requires that reveal.js [runs from a local web server](#full-setup). + +```html +
    +
    +``` + +#### Element Attributes + +Special syntax (in html comment) is available for adding attributes to Markdown elements. This is useful for fragments, amongst other things. + +```html +
    + +
    +``` + +#### Slide Attributes + +Special syntax (in html comment) is available for adding attributes to the slide `
    ` elements generated by your Markdown. + +```html +
    + +
    +``` + + +### Configuration + +At the end of your page you need to initialize reveal by running the following code. Note that all config values are optional and will default as specified below. + +```javascript +Reveal.initialize({ + + // Display controls in the bottom right corner + controls: true, + + // Display a presentation progress bar + progress: true, + + // Display the page number of the current slide + slideNumber: false, + + // Push each slide change to the browser history + history: false, + + // Enable keyboard shortcuts for navigation + keyboard: true, + + // Enable the slide overview mode + overview: true, + + // Vertical centering of slides + center: true, + + // Enables touch navigation on devices with touch input + touch: true, + + // Loop the presentation + loop: false, + + // Change the presentation direction to be RTL + rtl: false, + + // Turns fragments on and off globally + fragments: true, + + // Flags if the presentation is running in an embedded mode, + // i.e. contained within a limited portion of the screen + embedded: false, + + // Flags if we should show a help overlay when the questionmark + // key is pressed + help: true, + + // Number of milliseconds between automatically proceeding to the + // next slide, disabled when set to 0, this value can be overwritten + // by using a data-autoslide attribute on your slides + autoSlide: 0, + + // Stop auto-sliding after user input + autoSlideStoppable: true, + + // Enable slide navigation via mouse wheel + mouseWheel: false, + + // Hides the address bar on mobile devices + hideAddressBar: true, + + // Opens links in an iframe preview overlay + previewLinks: false, + + // Transition style + transition: 'default', // none/fade/slide/convex/concave/zoom + + // Transition speed + transitionSpeed: 'default', // default/fast/slow + + // Transition style for full page slide backgrounds + backgroundTransition: 'default', // none/fade/slide/convex/concave/zoom + + // Number of slides away from the current that are visible + viewDistance: 3, + + // Parallax background image + parallaxBackgroundImage: '', // e.g. "'https://s3.amazonaws.com/hakim-static/reveal-js/reveal-parallax-1.jpg'" + + // Parallax background size + parallaxBackgroundSize: '', // CSS syntax, e.g. "2100px 900px" + + // Amount to move parallax background (horizontal and vertical) on slide change + // Number, e.g. 100 + parallaxBackgroundHorizontal: '', + parallaxBackgroundVertical: '' + +}); +``` + + +The configuration can be updated after initialization using the ```configure``` method: + +```javascript +// Turn autoSlide off +Reveal.configure({ autoSlide: 0 }); + +// Start auto-sliding every 5s +Reveal.configure({ autoSlide: 5000 }); +``` + + +### Dependencies + +Reveal.js doesn't _rely_ on any third party scripts to work but a few optional libraries are included by default. These libraries are loaded as dependencies in the order they appear, for example: + +```javascript +Reveal.initialize({ + dependencies: [ + // Cross-browser shim that fully implements classList - https://github.com/eligrey/classList.js/ + { src: 'lib/js/classList.js', condition: function() { return !document.body.classList; } }, + + // Interpret Markdown in
    elements + { src: 'plugin/markdown/marked.js', condition: function() { return !!document.querySelector( '[data-markdown]' ); } }, + { src: 'plugin/markdown/markdown.js', condition: function() { return !!document.querySelector( '[data-markdown]' ); } }, + + // Syntax highlight for elements + { src: 'plugin/highlight/highlight.js', async: true, callback: function() { hljs.initHighlightingOnLoad(); } }, + + // Zoom in and out with Alt+click + { src: 'plugin/zoom-js/zoom.js', async: true }, + + // Speaker notes + { src: 'plugin/notes/notes.js', async: true }, + + // Remote control your reveal.js presentation using a touch device + { src: 'plugin/remotes/remotes.js', async: true }, + + // MathJax + { src: 'plugin/math/math.js', async: true } + ] +}); +``` + +You can add your own extensions using the same syntax. The following properties are available for each dependency object: +- **src**: Path to the script to load +- **async**: [optional] Flags if the script should load after reveal.js has started, defaults to false +- **callback**: [optional] Function to execute when the script has loaded +- **condition**: [optional] Function which must return true for the script to be loaded + + +### Ready Event + +A 'ready' event is fired when reveal.js has loaded all non-async dependencies and is ready to start navigating. To check if reveal.js is already 'ready' you can call `Reveal.isReady()`. + +```javascript +Reveal.addEventListener( 'ready', function( event ) { + // event.currentSlide, event.indexh, event.indexv +} ); +``` + + +### Presentation Size + +All presentations have a normal size, that is the resolution at which they are authored. The framework will automatically scale presentations uniformly based on this size to ensure that everything fits on any given display or viewport. + +See below for a list of configuration options related to sizing, including default values: + +```javascript +Reveal.initialize({ + + ... + + // The "normal" size of the presentation, aspect ratio will be preserved + // when the presentation is scaled to fit different resolutions. Can be + // specified using percentage units. + width: 960, + height: 700, + + // Factor of the display size that should remain empty around the content + margin: 0.1, + + // Bounds for smallest/largest possible scale to apply to content + minScale: 0.2, + maxScale: 1.5 + +}); +``` + + +### Auto-sliding + +Presentations can be configured to progress through slides automatically, without any user input. To enable this you will need to tell the framework how many milliseconds it should wait between slides: + +```javascript +// Slide every five seconds +Reveal.configure({ + autoSlide: 5000 +}); +``` +When this is turned on a control element will appear that enables users to pause and resume auto-sliding. Alternatively, sliding can be paused or resumed by pressing »a« on the keyboard. Sliding is paused automatically as soon as the user starts navigating. You can disable these controls by specifying ```autoSlideStoppable: false``` in your reveal.js config. + +You can also override the slide duration for individual slides and fragments by using the ```data-autoslide``` attribute: + +```html +
    +

    After 2 seconds the first fragment will be shown.

    +

    After 10 seconds the next fragment will be shown.

    +

    Now, the fragment is displayed for 2 seconds before the next slide is shown.

    +
    +``` + +Whenever the auto-slide mode is resumed or paused the ```autoslideresumed``` and ```autoslidepaused``` events are fired. + + +### Keyboard Bindings + +If you're unhappy with any of the default keyboard bindings you can override them using the ```keyboard``` config option: + +```javascript +Reveal.configure({ + keyboard: { + 13: 'next', // go to the next slide when the ENTER key is pressed + 27: function() {}, // do something custom when ESC is pressed + 32: null // don't do anything when SPACE is pressed (i.e. disable a reveal.js default binding) + } +}); +``` + +### Lazy Loading + +When working on presentation with a lot of media or iframe content it's important to load lazily. Lazy loading means that reveal.js will only load content for the few slides nearest to the current slide. The number of slides that are preloaded is determined by the `viewDistance` configuration option. + +To enable lazy loading all you need to do is change your "src" attributes to "data-src" as shown below. This is supported for image, video, audio and iframe elements. Lazy loaded iframes will also unload when the containing slide is no longer visible. + +```html +
    + + + +
    +``` + + +### API + +The ``Reveal`` object exposes a JavaScript API for controlling navigation and reading state: + +```javascript +// Navigation +Reveal.slide( indexh, indexv, indexf ); +Reveal.left(); +Reveal.right(); +Reveal.up(); +Reveal.down(); +Reveal.prev(); +Reveal.next(); +Reveal.prevFragment(); +Reveal.nextFragment(); + +// Toggle presentation states, optionally pass true/false to force on/off +Reveal.toggleOverview(); +Reveal.togglePause(); +Reveal.toggleAutoSlide(); + +// Change a config value at runtime +Reveal.configure({ controls: true }); + +// Returns the present configuration options +Reveal.getConfig(); + +// Fetch the current scale of the presentation +Reveal.getScale(); + +// Retrieves the previous and current slide elements +Reveal.getPreviousSlide(); +Reveal.getCurrentSlide(); + +Reveal.getIndices(); // { h: 0, v: 0 } } +Reveal.getProgress(); // 0-1 +Reveal.getTotalSlides(); + +// State checks +Reveal.isFirstSlide(); +Reveal.isLastSlide(); +Reveal.isOverview(); +Reveal.isPaused(); +Reveal.isAutoSliding(); +``` + +### Slide Changed Event + +A 'slidechanged' event is fired each time the slide is changed (regardless of state). The event object holds the index values of the current slide as well as a reference to the previous and current slide HTML nodes. + +Some libraries, like MathJax (see [#226](https://github.com/hakimel/reveal.js/issues/226#issuecomment-10261609)), get confused by the transforms and display states of slides. Often times, this can be fixed by calling their update or render function from this callback. + +```javascript +Reveal.addEventListener( 'slidechanged', function( event ) { + // event.previousSlide, event.currentSlide, event.indexh, event.indexv +} ); +``` + +### Presentation State + +The presentation's current state can be fetched by using the `getState` method. A state object contains all of the information required to put the presentation back as it was when `getState` was first called. Sort of like a snapshot. It's a simple object that can easily be stringified and persisted or sent over the wire. + +```javascript +Reveal.slide( 1 ); +// we're on slide 1 + +var state = Reveal.getState(); + +Reveal.slide( 3 ); +// we're on slide 3 + +Reveal.setState( state ); +// we're back on slide 1 +``` + +### Slide States + +If you set ``data-state="somestate"`` on a slide ``
    ``, "somestate" will be applied as a class on the document element when that slide is opened. This allows you to apply broad style changes to the page based on the active slide. + +Furthermore you can also listen to these changes in state via JavaScript: + +```javascript +Reveal.addEventListener( 'somestate', function() { + // TODO: Sprinkle magic +}, false ); +``` + +### Slide Backgrounds + +Slides are contained within a limited portion of the screen by default to allow them to fit any display and scale uniformly. You can apply full page backgrounds outside of the slide area by adding a ```data-background``` attribute to your ```
    ``` elements. Four different types of backgrounds are supported: color, image, video and iframe. Below are a few examples. + +```html +
    +

    All CSS color formats are supported, like rgba() or hsl().

    +
    +
    +

    This slide will have a full-size background image.

    +
    +
    +

    This background image will be sized to 100px and repeated.

    +
    +
    +

    Video. Multiple sources can be defined using a comma separated list. Video will loop when the data-background-video-loop attribute is provided.

    +
    +
    +

    Embeds a web page as a background. Note that the page won't be interactive.

    +
    +``` + +Backgrounds transition using a fade animation by default. This can be changed to a linear sliding transition by passing ```backgroundTransition: 'slide'``` to the ```Reveal.initialize()``` call. Alternatively you can set ```data-background-transition``` on any section with a background to override that specific transition. + + +### Parallax Background + +If you want to use a parallax scrolling background, set the first two config properties below when initializing reveal.js (the other two are optional). + +```javascript +Reveal.initialize({ + + // Parallax background image + parallaxBackgroundImage: '', // e.g. "https://s3.amazonaws.com/hakim-static/reveal-js/reveal-parallax-1.jpg" + + // Parallax background size + parallaxBackgroundSize: '', // CSS syntax, e.g. "2100px 900px" - currently only pixels are supported (don't use % or auto) + + // Amount of pixels to move the parallax background per slide step, + // a value of 0 disables movement along the given axis + // These are optional, if they aren't specified they'll be calculated automatically + parallaxBackgroundHorizontal: 200, + parallaxBackgroundVertical: 50 + +}); +``` + +Make sure that the background size is much bigger than screen size to allow for some scrolling. [View example](http://lab.hakim.se/reveal-js/?parallaxBackgroundImage=https%3A%2F%2Fs3.amazonaws.com%2Fhakim-static%2Freveal-js%2Freveal-parallax-1.jpg¶llaxBackgroundSize=2100px%20900px). + + + +### Slide Transitions +The global presentation transition is set using the ```transition``` config value. You can override the global transition for a specific slide by using the ```data-transition``` attribute: + +```html +
    +

    This slide will override the presentation transition and zoom!

    +
    + +
    +

    Choose from three transition speeds: default, fast or slow!

    +
    +``` + +You can also use different in and out transitions for the same slide: + +```html +
    + The train goes on … +
    +
    + and on … +
    +
    + and stops. +
    +
    + (Passengers entering and leaving) +
    +
    + And it starts again. +
    +``` + + +Note that this does not work with the page and cube transitions. + + +### Internal links + +It's easy to link between slides. The first example below targets the index of another slide whereas the second targets a slide with an ID attribute (```
    ```): + +```html +Link +Link +``` + +You can also add relative navigation links, similar to the built in reveal.js controls, by appending one of the following classes on any element. Note that each element is automatically given an ```enabled``` class when it's a valid navigation route based on the current slide. + +```html + + + + + + +``` + + +### Fragments +Fragments are used to highlight individual elements on a slide. Every element with the class ```fragment``` will be stepped through before moving on to the next slide. Here's an example: http://lab.hakim.se/reveal-js/#/fragments + +The default fragment style is to start out invisible and fade in. This style can be changed by appending a different class to the fragment: + +```html +
    +

    grow

    +

    shrink

    +

    fade-out

    +

    visible only once

    +

    blue only once

    +

    highlight-red

    +

    highlight-green

    +

    highlight-blue

    +
    +``` + +Multiple fragments can be applied to the same element sequentially by wrapping it, this will fade in the text on the first step and fade it back out on the second. + +```html +
    + + I'll fade in, then out + +
    +``` + +The display order of fragments can be controlled using the ```data-fragment-index``` attribute. + +```html +
    +

    Appears last

    +

    Appears first

    +

    Appears second

    +
    +``` + +### Fragment events + +When a slide fragment is either shown or hidden reveal.js will dispatch an event. + +Some libraries, like MathJax (see #505), get confused by the initially hidden fragment elements. Often times this can be fixed by calling their update or render function from this callback. + +```javascript +Reveal.addEventListener( 'fragmentshown', function( event ) { + // event.fragment = the fragment DOM element +} ); +Reveal.addEventListener( 'fragmenthidden', function( event ) { + // event.fragment = the fragment DOM element +} ); +``` + +### Code syntax highlighting + +By default, Reveal is configured with [highlight.js](http://softwaremaniacs.org/soft/highlight/en/) for code syntax highlighting. Below is an example with clojure code that will be syntax highlighted. When the `data-trim` attribute is present surrounding whitespace is automatically removed. + +```html +
    + 
    
+(def lazy-fib
+  (concat
+   [0 1]
+   ((fn rfib [a b]
+        (lazy-cons (+ a b) (rfib b (+ a b)))) 0 1)))
+
    +
    +``` + +### Slide number +If you would like to display the page number of the current slide you can do so using the ```slideNumber``` configuration value. + +```javascript +// Shows the slide number using default formatting +Reveal.configure({ slideNumber: true }); + +// Slide number formatting can be configured using these variables: +// h: current slide's horizontal index +// v: current slide's vertical index +// c: current slide index (flattened) +// t: total number of slides (flattened) +Reveal.configure({ slideNumber: 'c / t' }); + +``` + + +### Overview mode + +Press "Esc" or "o" keys to toggle the overview mode on and off. While you're in this mode, you can still navigate between slides, +as if you were at 1,000 feet above your presentation. The overview mode comes with a few API hooks: + +```javascript +Reveal.addEventListener( 'overviewshown', function( event ) { /* ... */ } ); +Reveal.addEventListener( 'overviewhidden', function( event ) { /* ... */ } ); + +// Toggle the overview mode programmatically +Reveal.toggleOverview(); +``` + +### Fullscreen mode +Just press »F« on your keyboard to show your presentation in fullscreen mode. Press the »ESC« key to exit fullscreen mode. + + +### Embedded media +Embedded HTML5 `