From 5109b6505c44452414807484f8dd8db1e1c5035e Mon Sep 17 00:00:00 2001 From: Lars Bogner Date: Fri, 24 Jul 2026 10:30:20 +0200 Subject: [PATCH] Move build system from setuptools to uv, wire uv into CI/CD Convert both pyproject.toml files to the uv_build backend and turn the repo into a proper uv workspace (plotstyle moved to src layout, since uv_build requires the module in its own subdirectory). Dev tooling moves from an optional-dependencies extra to a dependency-group, and plotstyle's matplotlib dependency is now its own rather than a gallery "plotting" extra. Gitea Actions workflows and the Dockerfile now use astral-sh/setup-uv, uv sync, uv run, uv build, and uv publish throughout instead of pip, build, and twine. Also fixes .dockerignore, which was excluding uv.lock, deploy/, and README.md and would have broken even the previous Dockerfile's COPY of deploy/entrypoint.sh. Co-Authored-By: Claude Sonnet 5 --- .dockerignore | 3 - .gitea/workflows/ci.yml | 45 +- .gitea/workflows/publish-plotstyle.yml | 39 + CLAUDE.md | 44 +- Dockerfile | 18 +- README.md | 12 +- plotstyle/CLAUDE.md | 15 +- plotstyle/README.md | 40 + plotstyle/pyproject.toml | 37 + plotstyle/{ => src/plotstyle}/__init__.py | 0 plotstyle/{ => src/plotstyle}/annotations.py | 0 .../plotstyle}/assets/plotstyle.mplstyle | 0 plotstyle/{ => src/plotstyle}/colors.py | 0 plotstyle/{ => src/plotstyle}/figures.py | 0 plotstyle/{ => src/plotstyle}/style.py | 0 pyproject.toml | 23 +- uv.lock | 1562 ++++++++++------- 17 files changed, 1081 insertions(+), 757 deletions(-) create mode 100644 .gitea/workflows/publish-plotstyle.yml create mode 100644 plotstyle/README.md create mode 100644 plotstyle/pyproject.toml rename plotstyle/{ => src/plotstyle}/__init__.py (100%) rename plotstyle/{ => src/plotstyle}/annotations.py (100%) rename plotstyle/{ => src/plotstyle}/assets/plotstyle.mplstyle (100%) rename plotstyle/{ => src/plotstyle}/colors.py (100%) rename plotstyle/{ => src/plotstyle}/figures.py (100%) rename plotstyle/{ => src/plotstyle}/style.py (100%) diff --git a/.dockerignore b/.dockerignore index 55ce070..58323d6 100644 --- a/.dockerignore +++ b/.dockerignore @@ -10,8 +10,5 @@ build *.egg-info .claude config.yaml -deploy/ docs/ -README.md CLAUDE.md -uv.lock diff --git a/.gitea/workflows/ci.yml b/.gitea/workflows/ci.yml index 933b77f..0bb480d 100644 --- a/.gitea/workflows/ci.yml +++ b/.gitea/workflows/ci.yml @@ -10,52 +10,48 @@ jobs: runs-on: ubuntu-latest steps: - uses: actions/checkout@v4 - - uses: actions/setup-python@v5 + - uses: astral-sh/setup-uv@v9.0.0 with: python-version: "3.11" - cache: pip - cache-dependency-path: pyproject.toml - - run: pip install -e ".[dev,plotting]" - - run: ruff check gallery plotstyle tests + enable-cache: true + - run: uv sync --all-packages + - run: uv run ruff check gallery plotstyle tests format: name: format:ruff runs-on: ubuntu-latest steps: - uses: actions/checkout@v4 - - uses: actions/setup-python@v5 + - uses: astral-sh/setup-uv@v9.0.0 with: python-version: "3.11" - cache: pip - cache-dependency-path: pyproject.toml - - run: pip install -e ".[dev,plotting]" - - run: ruff format --check gallery plotstyle tests + enable-cache: true + - run: uv sync --all-packages + - run: uv run ruff format --check gallery plotstyle tests typecheck: name: typecheck:ty runs-on: ubuntu-latest steps: - uses: actions/checkout@v4 - - uses: actions/setup-python@v5 + - uses: astral-sh/setup-uv@v9.0.0 with: python-version: "3.11" - cache: pip - cache-dependency-path: pyproject.toml - - run: pip install -e ".[dev,plotting]" - - run: ty check gallery plotstyle + enable-cache: true + - run: uv sync --all-packages + - run: uv run ty check gallery plotstyle vulnerabilities: name: vulnerabilities:pip-audit runs-on: ubuntu-latest steps: - uses: actions/checkout@v4 - - uses: actions/setup-python@v5 + - uses: astral-sh/setup-uv@v9.0.0 with: python-version: "3.11" - cache: pip - cache-dependency-path: pyproject.toml - - run: pip install -e ".[dev,plotting]" - - run: pip-audit --skip-editable + enable-cache: true + - run: uv sync --all-packages + - run: uv run pip-audit --skip-editable test: name: test:pytest @@ -63,10 +59,9 @@ jobs: needs: [lint, format, typecheck, vulnerabilities] steps: - uses: actions/checkout@v4 - - uses: actions/setup-python@v5 + - uses: astral-sh/setup-uv@v9.0.0 with: python-version: "3.11" - cache: pip - cache-dependency-path: pyproject.toml - - run: pip install -e ".[dev,plotting]" - - run: python -m pytest tests/ -v + enable-cache: true + - run: uv sync --all-packages + - run: uv run pytest tests/ -v diff --git a/.gitea/workflows/publish-plotstyle.yml b/.gitea/workflows/publish-plotstyle.yml new file mode 100644 index 0000000..5ec65c1 --- /dev/null +++ b/.gitea/workflows/publish-plotstyle.yml @@ -0,0 +1,39 @@ +name: Publish plotstyle + +on: + push: + tags: + - "plotstyle-v*" + +permissions: + contents: read + packages: write + +jobs: + publish: + name: build-and-publish + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v4 + + - uses: astral-sh/setup-uv@v9.0.0 + with: + python-version: "3.11" + + - name: Verify tag matches package version + run: | + tag_version="${GITHUB_REF_NAME#plotstyle-v}" + pkg_version="$(uv version --short --package plotstyle)" + if [ "$tag_version" != "$pkg_version" ]; then + echo "Tag plotstyle-v$tag_version does not match pyproject.toml version $pkg_version" >&2 + exit 1 + fi + + - name: Build wheel and sdist + run: uv build --package plotstyle -o dist + + - name: Publish to Gitea package registry + env: + UV_PUBLISH_USERNAME: ${{ github.actor }} + UV_PUBLISH_PASSWORD: ${{ secrets.GITHUB_TOKEN }} + run: uv publish --publish-url "${{ github.server_url }}/api/packages/${{ github.repository_owner }}/pypi" dist/* diff --git a/CLAUDE.md b/CLAUDE.md index 77521c4..621ecc3 100644 --- a/CLAUDE.md +++ b/CLAUDE.md @@ -8,39 +8,38 @@ A Python package that generates responsive static HTML galleries from scientific The repo also ships `plotstyle`, a standalone matplotlib styling toolkit (KIT corporate-design theme + building-block functions) for producing the PDF figures that feed into a `gallery` source directory. `gallery` never imports it — the only connection is the PDF files and `metadata.yaml` on disk. **See `plotstyle/CLAUDE.md` for full agent-facing usage docs, the API reference, and the metadata.yaml workflow.** +This repo is a **uv workspace** (root `pyproject.toml` has `[tool.uv.workspace] members = ["plotstyle"]`) and both projects build with uv's own `uv_build` backend — there is no setuptools anywhere in this repo. Use `uv`/`uv run` for everything; don't reach for `pip install` here. + ## Commands ```bash -# Install the package (editable) -pip install -e ".[dev]" - -# Also install plotstyle's dependency (matplotlib) if working on plot-producing scripts -pip install -e ".[dev,plotting]" # or: uv sync --extra dev --extra plotting +# Install everything (gallery + plotstyle + dev tools) into the shared workspace venv +uv sync --all-packages # Run all tests -pytest tests/ +uv run pytest tests/ # Run a single test file -pytest tests/test_generate_gallery.py -v -pytest tests/test_plotstyle.py -v +uv run pytest tests/test_generate_gallery.py -v +uv run pytest tests/test_plotstyle.py -v # Run a single test by name -pytest tests/test_generate_gallery.py::test_needs_update_missing_target -v +uv run pytest tests/test_generate_gallery.py::test_needs_update_missing_target -v # Generate gallery -gallery generate --verbose +uv run gallery generate --verbose # Generate with a non-default config -gallery --config config.yaml generate --verbose +uv run gallery --config config.yaml generate --verbose # Incremental update for one source only -gallery generate --source /path/to/plots --verbose +uv run gallery generate --source /path/to/plots --verbose # Clean regeneration -gallery generate --clean --verbose +uv run gallery generate --clean --verbose # Launch TUI -gallery tui +uv run gallery tui # Serve output locally python -m http.server 8000 -d /web/kschmidt/public_html/ @@ -49,10 +48,10 @@ python -m http.server 8000 -d /web/kschmidt/public_html/ Code style: ruff (lint + format), `line-length = 120`. Type-checked with `ty`. ```bash -ruff check gallery plotstyle tests -ruff format gallery plotstyle tests -ty check gallery plotstyle -pip-audit --skip-editable +uv run ruff check gallery plotstyle tests +uv run ruff format gallery plotstyle tests +uv run ty check gallery plotstyle +uv run pip-audit --skip-editable ``` **Before committing**, run the same checks CI (`.gitea/workflows/ci.yml`) runs and make sure they pass — `ruff check`, `ruff format --check`, `ty check`, `pip-audit`, and `pytest tests/`. Catching a failure locally is faster than waiting on the pipeline. @@ -90,7 +89,8 @@ generate() [api.py] | `gallery/assets/js/` | Vanilla JS modules loaded as ES modules; `GalleryApp` in `gallery-app.js` orchestrates all managers | | `gallery/assets/css/` | Modular CSS; `main.css` imports all others via `@import` | | `config.yaml` | Local deployment config (paths are machine-specific) | -| `plotstyle/` | Standalone matplotlib styling toolkit for producing plots (see `plotstyle/CLAUDE.md`) — not imported by `gallery/` | +| `plotstyle/` | Standalone matplotlib styling toolkit for producing plots (see `plotstyle/CLAUDE.md`) — not imported by `gallery/`; a separate uv workspace member with its own `pyproject.toml`, code under `plotstyle/src/plotstyle/` (src layout) | +| `.gitea/workflows/publish-plotstyle.yml` | Builds and publishes `plotstyle` to the Gitea package registry on `plotstyle-v*` tags | | `examples/plotstyle_showcase.ipynb` | Rendered, runnable tour of every `plotstyle` function | ### Config File Format @@ -125,7 +125,9 @@ Fields are freeform YAML (no fixed schema); `title`, `description`, `plot_type`, ### Plot-Producing Companion (`plotstyle`) -`plotstyle` (top-level package, optional `plotting` extra) is how plots destined for a `gallery` source directory should be produced — a KIT corporate-design matplotlib theme plus building blocks (`new_figure`, `colorbar`, `style_legend`, `panel_label`, `savefig`). It has no code dependency on `gallery`; the two only meet on disk, via the PDFs and `metadata.yaml` files a `plotstyle` script writes into a `gallery` source directory. **Full usage docs, API reference, best practices, and the metadata.yaml workflow live in `plotstyle/CLAUDE.md`** — read that file before writing or reviewing any script that `import plotstyle`. `examples/plotstyle_showcase.ipynb` is a rendered, runnable tour of every function. +`plotstyle` (a separate uv workspace member, see below) is how plots destined for a `gallery` source directory should be produced — a KIT corporate-design matplotlib theme plus building blocks (`new_figure`, `colorbar`, `style_legend`, `panel_label`, `savefig`). It has no code dependency on `gallery`; the two only meet on disk, via the PDFs and `metadata.yaml` files a `plotstyle` script writes into a `gallery` source directory. **Full usage docs, API reference, best practices, and the metadata.yaml workflow live in `plotstyle/CLAUDE.md`** — read that file before writing or reviewing any script that `import plotstyle`. `examples/plotstyle_showcase.ipynb` is a rendered, runnable tour of every function. + +`plotstyle` has its own `plotstyle/pyproject.toml` (own `uv_build` project, code lives in `plotstyle/src/plotstyle/`) and is a member of this repo's uv workspace (`[tool.uv.workspace] members = ["plotstyle"]` in the root `pyproject.toml`) — `uv sync --all-packages` installs both `gallery` and `plotstyle` (and matplotlib) into one shared venv, which is why `import plotstyle` works from `tests/` and the example notebook without `gallery` ever depending on it. It's also independently publishable: pushing a tag matching `plotstyle-v*` (e.g. `plotstyle-v0.1.0`) runs `.gitea/workflows/publish-plotstyle.yml`, which runs `uv build --package plotstyle` and `uv publish` to this repo's Gitea package registry (`{server}/api/packages/{owner}/pypi`) using the workflow's auto-generated token. The tag's version suffix must match `plotstyle/pyproject.toml`'s `version` field or the workflow fails fast — bump that version before tagging a new release. ### Frontend (Static JS/CSS) @@ -133,6 +135,6 @@ The frontend is vanilla ES modules — no build step. `assets/js/main.js` import ### Deployment -The project ships a `Dockerfile` plus `docker-compose.yml` (a `generator` service that runs `gallery generate` on an interval, and an `nginx`-based `web` service serving the output — see `deploy/entrypoint.sh` and `deploy/nginx.conf`). This suits a dedicated VM/server you fully control. CI (`.gitea/workflows/ci.yml`, run via Gitea Actions) runs `ruff check`, `ruff format --check`, `ty check`, `pip-audit`, and pytest on the default runner image with Python 3.11 via `actions/setup-python` — no container build/publish in CI. For local development the `.venv` (or `uv`) is sufficient. +The project ships a `Dockerfile` plus `docker-compose.yml` (a `generator` service that runs `gallery generate` on an interval, and an `nginx`-based `web` service serving the output — see `deploy/entrypoint.sh` and `deploy/nginx.conf`). This suits a dedicated VM/server you fully control. The `Dockerfile` is a two-stage build: a builder stage copies in the official `ghcr.io/astral-sh/uv` binary and runs `uv build --package gallery` to produce a wheel, then the final stage `pip install`s just that wheel (no dev deps, no workspace/lockfile needed at runtime). CI (`.gitea/workflows/ci.yml`, run via Gitea Actions) uses `astral-sh/setup-uv` + `uv sync --all-packages` and runs every check (`ruff check`, `ruff format --check`, `ty check`, `pip-audit`, `pytest`) via `uv run` — no plain `pip`/`actions/setup-python` anywhere in CI. For local development, `uv sync --all-packages` is all you need. On shared HPC login nodes without a Docker daemon (e.g. KIT ETP, where `public_html` is already auto-served) use a plain venv install plus a `systemd --user` timer instead — see `deploy/systemd/README.md`. diff --git a/Dockerfile b/Dockerfile index e283d23..3cca6ef 100644 --- a/Dockerfile +++ b/Dockerfile @@ -1,3 +1,15 @@ +FROM python:3.11-slim AS builder + +COPY --from=ghcr.io/astral-sh/uv:latest /uv /uvx /usr/local/bin/ + +WORKDIR /app + +COPY pyproject.toml uv.lock README.md ./ +COPY plotstyle/pyproject.toml plotstyle/README.md plotstyle/ +COPY gallery/ gallery/ + +RUN uv build --package gallery -o dist + FROM python:3.11-slim RUN apt-get update \ @@ -6,12 +18,10 @@ RUN apt-get update \ WORKDIR /app -COPY pyproject.toml . -COPY gallery/ gallery/ -COPY tests/ tests/ +COPY --from=builder /app/dist/*.whl /tmp/ COPY deploy/entrypoint.sh deploy/entrypoint.sh -RUN pip install --no-cache-dir ".[dev]" +RUN pip install --no-cache-dir /tmp/*.whl && rm /tmp/*.whl RUN useradd -r -s /bin/false gallery USER gallery diff --git a/README.md b/README.md index 1d7c312..7b6952e 100644 --- a/README.md +++ b/README.md @@ -60,13 +60,17 @@ gallery --help ### Optional: `plotstyle` (for producing plots) +`plotstyle` is a separate package (its own `plotstyle/pyproject.toml`, a member of this repo's uv workspace) — installing `gallery` alone never pulls in `matplotlib`. + ```bash -pip install -e ".[plotting]" -# or -uv sync --extra plotting +# Working in this repo (installs gallery + plotstyle + matplotlib together): +uv sync --all-packages + +# Just the plotstyle library, standalone: +pip install "plotstyle @ git+https://git.larsbogner.de/lars/ETPlot#subdirectory=plotstyle" ``` -This only installs `matplotlib` — it's kept out of the core dependencies so a plain gallery install stays lightweight. `plotstyle` also requires a local LaTeX toolchain (`latex` + `dvipng`) to be installed separately; see [Producing Plots with `plotstyle`](#producing-plots-with-plotstyle). +`plotstyle` also requires a local LaTeX toolchain (`latex` + `dvipng`) to be installed separately; see [Producing Plots with `plotstyle`](#producing-plots-with-plotstyle). ### Shell Completion (optional) diff --git a/plotstyle/CLAUDE.md b/plotstyle/CLAUDE.md index 72a4236..5fa7888 100644 --- a/plotstyle/CLAUDE.md +++ b/plotstyle/CLAUDE.md @@ -21,15 +21,18 @@ produces. Everything below is the reference; the notebook is the demo. ## Install +`plotstyle` is its own project (`plotstyle/pyproject.toml`, `uv_build` +backend, code under `plotstyle/src/plotstyle/`) and a member of this repo's +uv workspace (`[tool.uv.workspace]` in the root `pyproject.toml`) — not a +`gallery` extra. + ```bash -uv sync --extra plotting # this repo's uv workflow -# or -pip install -e ".[plotting]" +uv sync --all-packages # this repo's uv workflow — installs gallery + plotstyle together ``` -`plotstyle` is an optional extra (`matplotlib>=3.7`) so core `gallery` -installs stay lightweight — don't add matplotlib to `gallery`'s own -unconditional dependencies to support this package. +`matplotlib>=3.7` is `plotstyle`'s own direct dependency — don't add it to +`gallery`'s dependencies to support this package; `gallery` should stay +installable without ever pulling in matplotlib. **Hard requirement: a working local LaTeX toolchain (`latex` + `dvipng`).** `plotstyle.use()` sets `text.usetex = True` unconditionally — there is no diff --git a/plotstyle/README.md b/plotstyle/README.md new file mode 100644 index 0000000..741cb72 --- /dev/null +++ b/plotstyle/README.md @@ -0,0 +1,40 @@ +# plotstyle + +A KIT (Karlsruhe Institute of Technology) corporate-design matplotlib +styling toolkit — a validated color palette, consistent spines/ticks/ +gridlines, LaTeX text in a modern sans font, and a few building-block +functions (figure titles with a parameters subtitle, a same-size colorbar +helper, an outside-axes legend, panel labels) for producing figures that +look consistent across a thesis and a slide deck. + +Requires a local LaTeX toolchain (`latex` + `dvipng`) — `plotstyle` always +renders text through real LaTeX, there's no fallback. + +```python +import numpy as np +import plotstyle as ps + +ps.use() # once, before creating any figure + +fig, ax = ps.new_figure( + "thesis-single", + title="Measured signal", + params={"N": 512, "seed": 42}, +) +x = np.linspace(0, 10, 200) +ax.plot(x, np.sin(x), label="signal") +ax.set_xlabel("Time (s)") +ax.set_ylabel(r"Amplitude $A(t)$") +ps.style_legend(ax, title="Series") + +ps.savefig(fig, "plots/measured_signal", formats=("pdf",)) +``` + +This package is developed as part of the +[ETPlot](https://git.larsbogner.de/lars/ETPlot) monorepo, where it is paired +with `gallery`, a static HTML gallery generator that turns directories of +plot PDFs into a browsable website — `plotstyle` has no code dependency on +`gallery`, the two only meet on disk via the PDF (and optional +`metadata.yaml`) files a `plotstyle` script writes out. See that repo's +`examples/plotstyle_showcase.ipynb` for a fully rendered tour of every +function, and `plotstyle/CLAUDE.md` for the full API reference. diff --git a/plotstyle/pyproject.toml b/plotstyle/pyproject.toml new file mode 100644 index 0000000..da96b22 --- /dev/null +++ b/plotstyle/pyproject.toml @@ -0,0 +1,37 @@ +[build-system] +requires = ["uv_build>=0.11.19,<0.12.0"] +build-backend = "uv_build" + +[project] +name = "plotstyle" +version = "0.1.0" +description = "KIT corporate-design matplotlib styling toolkit for consistent scientific figures" +readme = "README.md" +requires-python = ">=3.8" +license = {text = "MIT"} +authors = [ + {name = "K. Schmidt"}, +] +keywords = [ + "matplotlib", + "plotting", + "scientific-computing", + "styling", +] +classifiers = [ + "Development Status :: 3 - Alpha", + "Intended Audience :: Science/Research", + "License :: OSI Approved :: MIT License", + "Operating System :: OS Independent", + "Programming Language :: Python :: 3", + "Programming Language :: Python :: 3.8", + "Programming Language :: Python :: 3.9", + "Programming Language :: Python :: 3.10", + "Programming Language :: Python :: 3.11", + "Programming Language :: Python :: 3.12", + "Topic :: Scientific/Engineering :: Visualization", +] + +dependencies = [ + "matplotlib>=3.7", +] diff --git a/plotstyle/__init__.py b/plotstyle/src/plotstyle/__init__.py similarity index 100% rename from plotstyle/__init__.py rename to plotstyle/src/plotstyle/__init__.py diff --git a/plotstyle/annotations.py b/plotstyle/src/plotstyle/annotations.py similarity index 100% rename from plotstyle/annotations.py rename to plotstyle/src/plotstyle/annotations.py diff --git a/plotstyle/assets/plotstyle.mplstyle b/plotstyle/src/plotstyle/assets/plotstyle.mplstyle similarity index 100% rename from plotstyle/assets/plotstyle.mplstyle rename to plotstyle/src/plotstyle/assets/plotstyle.mplstyle diff --git a/plotstyle/colors.py b/plotstyle/src/plotstyle/colors.py similarity index 100% rename from plotstyle/colors.py rename to plotstyle/src/plotstyle/colors.py diff --git a/plotstyle/figures.py b/plotstyle/src/plotstyle/figures.py similarity index 100% rename from plotstyle/figures.py rename to plotstyle/src/plotstyle/figures.py diff --git a/plotstyle/style.py b/plotstyle/src/plotstyle/style.py similarity index 100% rename from plotstyle/style.py rename to plotstyle/src/plotstyle/style.py diff --git a/pyproject.toml b/pyproject.toml index 1efed0b..757e0ca 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [build-system] -requires = ["setuptools>=83.0.0", "wheel"] -build-backend = "setuptools.build_meta" +requires = ["uv_build>=0.11.19,<0.12.0"] +build-backend = "uv_build" [project] name = "gallery" @@ -43,25 +43,22 @@ dependencies = [ "textual>=0.50", ] -[project.optional-dependencies] +[project.scripts] +gallery = "gallery.cli:main" + +[dependency-groups] dev = [ "pytest>=7.0", "ruff>=0.6", "ty>=0.0.1", "pip-audit>=2.7", - "setuptools>=83.0.0", -] -plotting = [ - "matplotlib>=3.7", ] -[project.scripts] -gallery = "gallery.cli:main" +[tool.uv.workspace] +members = ["plotstyle"] -[tool.setuptools] -packages = ["gallery", "gallery.utils", "gallery.config", "plotstyle"] -package-data = {gallery = ["templates/*", "assets/css/*", "assets/js/*", "config/*"], plotstyle = ["assets/*.mplstyle"]} -include-package-data = true +[tool.uv.build-backend] +module-root = "" [tool.ruff] line-length = 120 diff --git a/uv.lock b/uv.lock index 0a98c97..30f4e5f 100644 --- a/uv.lock +++ b/uv.lock @@ -11,6 +11,12 @@ resolution-markers = [ "python_full_version < '3.8.1'", ] +[manifest] 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